MirGeneDB ID | Bge-Mir-12 |
Family name |
MIR-12 (all species) |
Seed |
GAGUAUU |
Species |
Cockroach (Blattella germanica) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aae-Mir-12
Bpl-Mir-12
Cgi-Mir-12
Csc-Mir-12
Cte-Mir-12
Dan-Mir-12
Dma-Mir-12
Dme-Mir-12
Dmo-Mir-12
Dpu-Mir-12
Dsi-Mir-12
Efe-Mir-12-P1
Efe-Mir-12-P2
Esc-Mir-12
Hme-Mir-12
Isc-Mir-12
Lan-Mir-12-P3
Lan-Mir-12-P4
Lgi-Mir-12
Lpo-Mir-12-P5
Lpo-Mir-12-P6
Lpo-Mir-12-P7
Lpo-Mir-12-P8
Npo-Mir-12
Ovu-Mir-12
Sme-Mir-12-P9
Sme-Mir-12-P10
Sme-Mir-12-P11
Tca-Mir-12
|
Node of Origin (locus) |
Protostomia
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Node of Origin (family) |
Protostomia
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Genome context (Bger_2.0) |
KZ614411.1: 688819-688880 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UCUUGACGCUUGUUGAUGGGCGUCGAGCCGUGAGUAUUACAUCAGGUACUGGUGAGACAUUAGAACAACCCAGUACUUGUGUUAUACUUUCGAUUCGGCUGCUCUUGCUCAUCCACCUAGAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCUUGACGCUUGUUGAU- -| GC U U U UGAGACAU
GGGC GUCGA CG GAGUAU ACA CAGGUACUGG \
CUCG CGGCU GC UUCAUA UGU GUUCAUGACC U
UAGAUCCACCUACUCGUU U^ UA U U - CAACAAGA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Ad |
Ad |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
Co |
Co |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
No |
No |
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Mature sequence |
Bge-Mir-12_5p |
mirBase accession | None |
Sequence |
0- UGAGUAUUACAUCAGGUACUGGU -23
Get sequence
|
Star sequence |
Bge-Mir-12_3p* |
mirBase accession | None |
Sequence |
40- CAGUACUUGUGUUAUACUUUCG -62
Get sequence
|