MirGeneDB 2.1

MirGeneDB ID

Bge-Mir-92-o66

Family name MIR-92 (all species)
Seed AUUGCAC
Species Cockroach (Blattella germanica)
MiRBase ID
Paralogues Bge-Mir-92-o63  Bge-Mir-92-o64  Bge-Mir-92-o65 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) B. germanica
Node of Origin (family) Bilateria
Genome context
(Bger_2.0)
KZ614500.1: 94957-95013 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAACGGAAUGGAUAUCACUGGUUCCUUUCAGGAUAUGACAUUUGCAAAUUUUGUGAUUUAAAAAAUUGCACUUGUUAUAUUCUUGAAAGCACCAGAGUAGCACCAAGAUGUCCUUA
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Structure
        10           20        30         40        50       
AAAACGGAAUGGAUAUCA---|    UC         -       UU     A   UGUG 
                     CUGGU  CUUUCAGGA UAUGACA  UGCAA UUU    A
                     GACCA  GAAAGUUCU AUAUUGU  ACGUU AAA    U
AUUCCUGUAGAACCACGAUGA^    C-         U       UC     A   AAUU 
     110       100         90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Ad Ad Ny Ny Ny Ny Ny Ny Ny Ny Ov Co Co Em Em Em Em Em Em Em Em Em Em No No
Star sequence

Bge-Mir-92-o66_5p*

mirBase accessionNone
Sequence
0- AGGAUAUGACAUUUGCAAAUUU -22
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Mature sequence

Bge-Mir-92-o66_3p

mirBase accessionNone
Sequence
34- AAUUGCACUUGUUAUAUUCUUGA -57
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