MirGeneDB ID | Bge-Novel-10-P2 |
Family name |
BGE-NOVEL-10 (all species) |
Seed |
CGUUGUA |
Species |
Cockroach (Blattella germanica) |
MiRBase ID |
|
Paralogues |
Bge-Novel-10-P1
|
Orthologues |
|
Node of Origin (locus) |
B. germanica
|
Node of Origin (family) |
B. germanica
|
Genome context (Bger_2.0) |
KZ614500.1: 92716-92772 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGAGCAAAAUUGAUAUUGCUGGAUUCUUUCACGUUGUAACUUGUGUAAAUUAUGAUGUAAGAUAUAAUUACACUUGUUACGACCGGAAAGCACCAGUUACUUACUGCAUUGCACUGG
Get precursor sequence
|
Structure | 10 20 30 40 50
UGAGCAAAAUUGAUAUU---| AUU AC UU A GAUG
GCUGG CUUUC GUUGUAAC GUGUAA UUAU U
UGACC GAAAG CAGCAUUG CACAUU AAUA A
GGUCACGUUACGUCAUUCAU^ AC- GC UU - UAGA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
Ad |
Ad |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
Co |
Co |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
No |
No |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Bge-Novel-10-P2_5p |
mirBase accession | None |
Sequence |
0- ACGUUGUAACUUGUGUAAAUUAU -23
Get sequence
|
Star sequence |
Bge-Novel-10-P2_3p* |
mirBase accession | None |
Sequence |
35- AAUUACACUUGUUACGACCGGA -57
Get sequence
|