MirGeneDB ID | Bge-Novel-7 |
Family name |
BGE-NOVEL-7 (all species) |
Seed |
UCAGUUC |
Species |
Cockroach (Blattella germanica) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
B. germanica
|
Node of Origin (family) |
B. germanica
|
Genome context (Bger_2.0) |
KZ614500.1: 22408-22466 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGAAAGAACGUUUCUGUGCUGAGUUAAGUGUUCAGUUCUCUUUACCUUUUACUUUGAAUUUGAUUAGUAAAGGGCUAAGAUGACUGGCACUUCGCUAAGUAUACUCCUACGUCAUUGGA
Get precursor sequence
|
Structure | 10 20 30 40 50
AGAAAGAACGUUUCUGU--| G U U C UA UUGAA
GCU AGU AAGUGU CAGUU UCUU CCUUUUACU U
UGA UCG UUCACG GUCAG AGAA GGGAAAUGA U
AGGUUACUGCAUCCUCAUA^ A C - U UC UUAGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
Ad |
Ad |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
Co |
Co |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
No |
No |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Bge-Novel-7_5p |
mirBase accession | None |
Sequence |
0- UUCAGUUCUCUUUACCUUUUACU -23
Get sequence
|
Star sequence |
Bge-Novel-7_3p* |
mirBase accession | None |
Sequence |
37- UAAAGGGCUAAGAUGACUGGCA -59
Get sequence
|