Mir-184-P15a5

MirGeneDB ID

Cgi-Mir-184-P15a5

Family name

MIR-184 (all species)

Seed

GGACGGA

Species

Pacific oyster (Crassostrea gigas)

MiRBase ID

Paralogues

Cgi-Mir-184-P7 Cgi-Mir-184-P8a Cgi-Mir-184-P8b Cgi-Mir-184-P8c Cgi-Mir-184-P8d Cgi-Mir-184-P9 Cgi-Mir-184-P10 Cgi-Mir-184-P11 Cgi-Mir-184-P12 Cgi-Mir-184-P13a Cgi-Mir-184-P13b Cgi-Mir-184-P14 Cgi-Mir-184-P15a1 Cgi-Mir-184-P15a2 Cgi-Mir-184-P15a3 Cgi-Mir-184-P15a4 Cgi-Mir-184-P15a6 Cgi-Mir-184-P15a7 Cgi-Mir-184-P15b Cgi-Mir-184-P15c Cgi-Mir-184-P15d Cgi-Mir-184-P15e1 Cgi-Mir-184-P15e2 Cgi-Mir-184-P15e3 Cgi-Mir-184-P15f Cgi-Mir-184-P15g1 Cgi-Mir-184-P15g2 Cgi-Mir-184-P15g3 Cgi-Mir-184-P15h Cgi-Mir-184-P15i Cgi-Mir-184-P15j Cgi-Mir-184-P15k Cgi-Mir-184-P15l1 Cgi-Mir-184-P15l2 Cgi-Mir-184-P15m Cgi-Mir-184-P15n Cgi-Mir-184-P15o Cgi-Mir-184-P15p Cgi-Mir-184-P15q Cgi-Mir-184-P15r Cgi-Mir-184-P15s Cgi-Mir-184-P15t Cgi-Mir-184-P15u

Orthologues

Aae-Mir-184 Aca-Mir-184 Ami-Mir-184 Asu-Mir-184 Bfl-Mir-184 Bge-Mir-184 Bla-Mir-184 Bpl-Mir-184 Bta-Mir-184 Cfa-Mir-184 Cin-Mir-184 Cli-Mir-184 Cmi-Mir-184 Cpi-Mir-184 Cpo-Mir-184 Dan-Mir-184 Dma-Mir-184 Dme-Mir-184 Dmo-Mir-184 Dno-Mir-184 Dpu-Mir-184 Dsi-Mir-184 Dya-Mir-184 Esc-Mir-184 Ete-Mir-184 Gga-Mir-184 Gja-Mir-184 Hme-Mir-184 Hsa-Mir-184 Isc-Mir-184 Lan-Mir-184 Lch-Mir-184 Loc-Mir-184 Mdo-Mir-184 Mml-Mir-184 Mmu-Mir-184 Npo-Mir-184 Oan-Mir-184 Ocu-Mir-184 Pbv-Mir-184 Pfl-Mir-184 Pma-Mir-184 Pmi-Mir-184 Rno-Mir-184 Sha-Mir-184 Sko-Mir-184 Spt-Mir-184 Spu-Mir-184 Sto-Mir-184 Tca-Mir-184 Tgu-Mir-184 Xtr-Mir-184

Node of Origin (locus)

C. gigas

Node of Origin (family)

Bilateria

Genome context
(CGI_GCA_000297895.1)

scaffold121: 721856-721913 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

CACAGAUAACAAAUACAACGUGUUGCGUUUCCUUGUCACACAUUCGUCACAGUGACAUUCAAACACUGGACGGAAGUCUGAUAAGGGAUCGCUAAGGGAACUUCUUCACGAUGUCAAG

Get precursor sequence

Structure

        10        20          30        40        50         
CACAGAUAACAAAUACAACGUGUU--|  U          C  A      A    GACAU 
                          GCG UUCCUUGUCA AC UUCGUC CAGU     \
                          CGC AGGGAAUAGU UG AGGCAG GUCA     U
GAACUGUAGCACUUCUUCAAGGGAAU^  U          C  A      -    CAAAC 
      110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

A-	D-	D-	Eg	F-	Gi	He	Ju	L-	Ma	Ma	Pe	Re	Sp	Um	Ea	Fe	Ha	La	Ma

Star sequence

Cgi-Mir-184-P15a5_5p*

mirBase accession

None

Sequence

0- CCUUGUCACACAUUCGUCACAGU -23

Get sequence

Mature sequence

Cgi-Mir-184-P15a5_3p

mirBase accession

None

Sequence

36- UGGACGGAAGUCUGAUAAGGGA -58

Get sequence