MirGeneDB 2.1

MirGeneDB ID

Csc-Mir-87-P1l

Family name MIR-87 (all species)
Seed UGAGCAA
Species Arizona bark scorpion (Centruroides sculpturatus)
MiRBase ID
Paralogues Csc-Mir-87-P1k1  Csc-Mir-87-P1k2  Csc-Mir-87-P2k  Csc-Mir-87-P2l 
Orthologues Bge-Mir-87-P1  Cbr-Mir-87-o1  Cel-Mir-87-o1  Cgi-Mir-87-P1  Cte-Mir-87-P1  Isc-Mir-87-P1  Lan-Mir-87-P1  Lgi-Mir-87-P1  Tca-Mir-87-P1 
Node of Origin (locus) C. sculpturatus
Node of Origin (family) Protostomia
Genome context
(GCF_000671375.1_CSC)
NW_019384506.1: 706723-706782 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAUACUUUUCCAGUUGUGAAGUUCUGGCGAGCCCGGAACUUUGCCUCAACCUGACAAAACAGACAGGUGAGCAAAGUUUCAGGUGUGUUGGAUCUUCAAAUAGUCUCCAUUUUCUAUG
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Structure
        10          20        30        40        50        60
AAAAUACUUUUCCAGUUG--|    U  UG   A   C          C   A   GACAA 
                    UGAAG UC  GCG GCC GGAACUUUGC UCA CCU     A
                    ACUUC AG  UGU UGG CUUUGAAACG AGU GGA     A
GUAUCUUUUACCUCUGAUAA^    U  GU   G   A          -   -   CAGAC 
.       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma
Star sequence

Csc-Mir-87-P1l_5p*

mirBase accessionNone
Sequence
0- GAGCCCGGAACUUUGCCUCAACCU -24
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Mature sequence

Csc-Mir-87-P1l_3p

mirBase accessionNone
Sequence
38- GUGAGCAAAGUUUCAGGUGUGU -60
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