MirGeneDB ID | Dmo-Mir-252-P1b |
Family name |
MIR-252 (all species) |
Seed |
UAAGUAG |
Species |
Fruit fly (Drosophila mojavensis) |
MiRBase ID |
|
Paralogues |
Dmo-Mir-252-P1a
Dmo-Mir-252-P2-v1
Dmo-Mir-252-P2-v2
|
Orthologues |
Asu-Mir-252-P1
Bfl-Mir-252-P1-v1
Bfl-Mir-252-P1-v2
Bge-Mir-252-P1
Bla-Mir-252-P1-v1
Bla-Mir-252-P1-v2
Cbr-Mir-252-P1
Cel-Mir-252-P1
Cgi-Mir-252-P1
Csc-Mir-252-P1
Cte-Mir-252-P1
Dan-Mir-252-P1b
Dma-Mir-252-P1-v1
Dma-Mir-252-P1-v2
Dme-Mir-252-P1b
Dpu-Mir-252-P1
Dsi-Mir-252-P1b
Dya-Mir-252-P1b
Esc-Mir-252-P1
Hme-Mir-252-P1
Isc-Mir-252-P1
Lan-Mir-252-P1
Lgi-Mir-252-P1
Npo-Mir-252-P1
Obi-Mir-252-P1
Ovu-Mir-252-P1
Pfl-Mir-252-P1
Pmi-Mir-252-P1
Sko-Mir-252-P1
Spu-Mir-252-P1
Tca-Mir-252-P1
|
Node of Origin (locus) |
Drosophila
|
Node of Origin (family) |
Bilateria
|
Genome context (Dmoj_caf1) |
scaffold_6500: 16664728-16664788 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAAUACUAAGUUUUGAUGAAAAUUCAGCACUUAAGUAGUUGAUACAAAGGCGAAUUUAUUAAAUUUAUCGCAUUGUGUGAGCUACUUAAAUGACAGAUUUUUAUAGUACGACUAAAAUAAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAAUACUAAGUUUUGAU--| CAG C G AG AUUUAU
GAAAAUU CA UUAAGUAGUU AUACAA GCGA U
UUUUUAG GU AAUUCAUCGA UGUGUU CGCU A
UAAUAAAAUCAGCAUGAUA^ ACA A G A- AUUUAA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Dmo-Mir-252-P1b_5p |
mirBase accession | None |
Sequence |
0- UUAAGUAGUUGAUACAAAGGCGA -23
Get sequence
|
Co-mature sequence |
Dmo-Mir-252-P1b_3p |
mirBase accession | None |
Sequence |
39- GCAUUGUGUGAGCUACUUAAAU -61
Get sequence
|