MirGeneDB ID | Dmo-Mir-9538 |
Family name |
MIR-9538 (all species) |
Seed |
GAGAUCA |
Species |
Fruit fly (Drosophila mojavensis) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
D. mojavensis
|
Node of Origin (family) |
D. mojavensis
|
Genome context (Dmoj_caf1) |
scaffold_6540: 6630127-6630196 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAUAACUCAGCCCUUCACGAUUGGGCUGCGAGUUAUUCUUGCUGUUGUCUCAUCUUAGAUAUCGUUCUGCUUGAAGGAUGAGAUCAGUCAGAAUAACUCGCAGCUCAAUUGAUAAGCAACAAGAUUUUUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAUAACUCAGCCCUUCA--| U UU UUAGAUAUCG
CGAUUGGGCUGCGAGUUAUUCU GCUG GUCUCAUC U
GUUAACUCGACGCUCAAUAAGA UGAC UAGAGUAG U
UUUUUUAGAACAACGAAUA^ C -- GAAGUUCGUC
. 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Dmo-Mir-9538_5p* |
mirBase accession | None |
Sequence |
0- AGUUAUUCUUGCUGUUGUCUCAUC -24
Get sequence
|
Mature sequence |
Dmo-Mir-9538_3p |
mirBase accession | None |
Sequence |
48- UGAGAUCAGUCAGAAUAACUCG -70
Get sequence
|