MirGeneDB 2.1

MirGeneDB ID

Dmo-Mir-988

Family name MIR-988 (all species)
Seed CCCUUGU
Species Fruit fly (Drosophila mojavensis)
MiRBase ID
Paralogues
Orthologues Aae-Mir-988  Dan-Mir-988  Dme-Mir-988  Dsi-Mir-988  Dya-Mir-988  Hme-Mir-988 
Node of Origin (locus) Diptera plus Lepidoptera
Node of Origin (family) Diptera plus Lepidoptera
Genome context
(Dmoj_caf1)
scaffold_6496: 6364119-6364177 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-988)
Mir-281-P2-v1 scaffold_6496: 6376080-6376147 [-] Ensembl
Mir-281-P2-v2 scaffold_6496: 6376080-6376147 [-] Ensembl
Mir-281-P1-v1 scaffold_6496: 6376244-6376308 [-] Ensembl
Mir-281-P1-v2 scaffold_6496: 6376245-6376307 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUCUAUCAUGUGUAUUUGCGCAUUUUGGUCGUGUGAUUUGUGGCAAAGUGAUGAGCUAUGAUUCCAUCCCCUUGUUGCAAACCUCACGCUGAAGGUGACGCAUAGCAGCAACAAUUGAA
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Structure
        10         20          30        40        50         
AUCUAUCAUGUGUAUUU-   -      -| U    UGA    UG    AGU   GAGCUA 
                  GCG CAUUUU GG CGUG   UUUG  GCAA   GAU      \
                  CGC GUGGAA UC GCAC   AAAC  UGUU   CUA      U
AAGUUAACAACGACGAUA   A      G^ -    UCC    GU    CCC   CCUUAG 
       110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Em Fe Ma Ma
Star sequence

Dmo-Mir-988_5p*

mirBase accessionNone
Sequence
0- GUGUGAUUUGUGGCAAAGUGAU -22
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Mature sequence

Dmo-Mir-988_3p

mirBase accessionNone
Sequence
37- CCCCUUGUUGCAAACCUCACGC -59
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