MirGeneDB ID | Dno-Mir-128-P1 |
Family name |
MIR-128 (all species) |
Seed |
CACAGUG |
Species |
Nine-banded armadillo (Dasypus novemcinctus) |
MiRBase ID |
dno-mir-128-2
|
Paralogues |
Dno-Mir-128-P2
|
Orthologues |
Aca-Mir-128-P1
Ami-Mir-128-P1
Bta-Mir-128-P1
Cfa-Mir-128-P1
Cli-Mir-128-P1
Cmi-Mir-128-P1
Cpi-Mir-128-P1
Cpo-Mir-128-P1
Dre-Mir-128-P1
Ebu-Mir-128
Ete-Mir-128-P1
Gga-Mir-128-P1
Gja-Mir-128-P1
Gmo-Mir-128-P1
Hsa-Mir-128-P1
Lch-Mir-128-P1
Loc-Mir-128-P1
Mal-Mir-128-P1
Mdo-Mir-128-P1
Mml-Mir-128-P1
Mmu-Mir-128-P1
Mun-Mir-128-P1
Oan-Mir-128-P1
Ocu-Mir-128-P1
Pbv-Mir-128-P1
Pma-Mir-128-o1
Rno-Mir-128-P1
Sha-Mir-128-P1
Spt-Mir-128-P1
Sto-Mir-128-P1
Tgu-Mir-128-P1
Tni-Mir-128-P1
Xla-Mir-128-P1a
Xla-Mir-128-P1b
Xtr-Mir-128-P1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (dasNov3) |
JH570423: 4138067-4138124 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGAACUCGGCAGCCACUGUGCAGUGGGAAGGGGGGCCGAUACACUGUACGAGAGUGAGUAGCAGGUCUCACAGUGAACCGGUCUCUUUCCCUACUGUGUCACACUCCUAAUGGAAUGC
Get precursor sequence
|
Structure | 10 20 30 40 50
AGAACUCGGCAGCCACU--|UG A AUA AC GUGAG
G CAGUGGG AGGGGGGCCG CACUGU GAGA U
U GUCAUCC UUUCUCUGGC GUGACA CUCU A
CGUAAGGUAAUCCUCACAC^GU C CAA -- GGACG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Dno-Mir-128-P1_5p* |
mirBase accession | MIMAT0047623 |
Sequence |
0- GGGGGCCGAUACACUGUACGAGA -23
Get sequence
|
Mature sequence |
Dno-Mir-128-P1_3p |
mirBase accession | MIMAT0047622 |
Sequence |
37- UCACAGUGAACCGGUCUCUUU -58
Get sequence
|