MirGeneDB ID | Dno-Mir-148-P1 |
Family name |
MIR-148 (all species) |
Seed |
CAGUGCA |
Species |
Nine-banded armadillo (Dasypus novemcinctus) |
MiRBase ID |
dno-mir-148a
|
Paralogues |
Dno-Mir-148-P3
Dno-Mir-148-P4
|
Orthologues |
Aca-Mir-148-P1
Bta-Mir-148-P1
Cfa-Mir-148-P1
Cli-Mir-148-P1
Cli-Mir-148-P1-as
Cmi-Mir-148-P1
Cpi-Mir-148-P1
Cpo-Mir-148-P1
Ebu-Mir-148
Ete-Mir-148-P1
Gga-Mir-148-P1
Gja-Mir-148-P1
Hsa-Mir-148-P1
Lch-Mir-148-P1
Loc-Mir-148-P1
Mdo-Mir-148-P1
Mml-Mir-148-P1
Mmu-Mir-148-P1
Mun-Mir-148-P1
Oan-Mir-148-P1
Ocu-Mir-148-P1
Pbv-Mir-148-P1
Pma-Mir-148-o1
Rno-Mir-148-P1
Spt-Mir-148-P1
Sto-Mir-148-P1
Tgu-Mir-148-P1
Tgu-Mir-148-P1-as
Xla-Mir-148-P1a
Xla-Mir-148-P1b
Xtr-Mir-148-P1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (dasNov3) |
JH568260: 707047-707106 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGGAAGACAGCCCGAUUGGUCUUUUGAGGCAAAGUUCUGAGACACUCCGACUCUGAGUAUGAUAGAAGUCAGUGCACUACAGAACUUUGUCUCUAGAGGCUGUGGUCGCCGCCGCGAGGG
Get precursor sequence
|
Structure | 10 20 30 40 50
AGGAAGACAGCCCGAUU-- U - A-| CC CUGAGU
GGUCUUU GAGGCAAAGUUCUG AG CACU GACU A
UCGGAGA CUCUGUUUCAAGAC UC GUGA CUGA U
GGGAGCGCCGCCGCUGGUG U A AC^ -- AGAUAG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Dno-Mir-148-P1_5p* |
mirBase accession | MIMAT0047669 |
Sequence |
0- AAAGUUCUGAGACACUCCGACU -22
Get sequence
|
Mature sequence |
Dno-Mir-148-P1_3p |
mirBase accession | MIMAT0047670 |
Sequence |
38- UCAGUGCACUACAGAACUUUGU -60
Get sequence
|