MirGeneDB ID | Dno-Mir-26-P1 |
Family name |
MIR-26 (all species) |
Seed |
UCAAGUA |
Species |
Nine-banded armadillo (Dasypus novemcinctus) |
MiRBase ID |
dno-mir-26a-1
|
Paralogues |
Dno-Mir-26-P2
Dno-Mir-26-P4
|
Orthologues |
Aca-Mir-26-P1
Ami-Mir-26-P1
Bta-Mir-26-P1
Cfa-Mir-26-P1
Cli-Mir-26-P1
Cmi-Mir-26-P1
Cpi-Mir-26-P1
Cpo-Mir-26-P1
Dre-Mir-26-P1a
Dre-Mir-26-P1b
Ete-Mir-26-P1
Gga-Mir-26-P1
Gja-Mir-26-P1
Gmo-Mir-26-P1a
Gmo-Mir-26-P1b
Hsa-Mir-26-P1
Lch-Mir-26-P1
Loc-Mir-26-P1
Mal-Mir-26-P1a
Mal-Mir-26-P1b
Mdo-Mir-26-P1
Mml-Mir-26-P1
Mmu-Mir-26-P1
Mun-Mir-26-P1
Oan-Mir-26-P1
Ocu-Mir-26-P1
Pbv-Mir-26-P1
Pma-Mir-26-o1
Rno-Mir-26-P1
Sha-Mir-26-P1
Spt-Mir-26-P1
Sto-Mir-26-P1
Tgu-Mir-26-P1
Tni-Mir-26-P1a
Tni-Mir-26-P1b
Xla-Mir-26-P1c
Xla-Mir-26-P1d
Xtr-Mir-26-P1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (dasNov3) |
JH570423: 6446036-6446096 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGAGGAGCCCUGGUGAAGGCCGUGGCCUCGUUCAAGUAAUCCAGGAUAGGCUGUGCAGGACCCAACGGGCCUAUUCUCGGUUACUUGCACGGGGACGCGAGCCUGCACGCCGGCAGCCGGG
Get precursor sequence
|
Structure | 10 20 30 40 50
GGAGGAGCCCUGGUGAA- -| G U C GUGCAGG
GGC CGUG CCUCGU CAAGUAAUC AGGAUAGGCU \
CCG GCGC GGGGCA GUUCAUUGG UCUUAUCCGG A
GGGCCGACGGCCGCACGU A^ A C C GCAACCC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Dno-Mir-26-P1_5p |
mirBase accession | MIMAT0047538 |
Sequence |
0- UUCAAGUAAUCCAGGAUAGGCU -22
Get sequence
|
Star sequence |
Dno-Mir-26-P1_3p* |
mirBase accession | MIMAT0047539 |
Sequence |
39- CCUAUUCUCGGUUACUUGCACG -61
Get sequence
|