MirGeneDB ID | Dno-Mir-28-P1 |
Family name |
MIR-28 (all species) |
Seed |
ACUAGAU |
Species |
Nine-banded armadillo (Dasypus novemcinctus) |
MiRBase ID |
dno-mir-28
|
Paralogues |
Dno-Mir-28-P2
Dno-Mir-28-P3
|
Orthologues |
Bta-Mir-28-P1
Cfa-Mir-28-P1
Cpo-Mir-28-P1
Ete-Mir-28-P1
Hsa-Mir-28-P1
Mml-Mir-28-P1
Mmu-Mir-28-P1
Ocu-Mir-28-P1
Rno-Mir-28-P1
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (dasNov3) |
JH569692: 396109-396170 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAGAGUGAAUAAAUAAUGGUCCUUGCCCUCAAGGAGCUCACAGUCUAUUGAGUUUCCUUUUUGACUUUCCCACUAGAUUGUGAGCUCCUGGAGGGCAGGCACUUUUGUUCAACUGGAAAAGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAGAGUGAAUAAAUAAU--| C A U AGUUUCCUU
GGU CUUGCCCUC AGGAGCUCACAGUCUA UG U
UCA GGACGGGAG UCCUCGAGUGUUAGAU AC U
AGAAAAGGUCAACUUGUUU^ C G C CCUUUCAGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Dno-Mir-28-P1_5p* |
mirBase accession | MIMAT0047547 |
Sequence |
0- AAGGAGCUCACAGUCUAUUGAG -22
Get sequence
|
Mature sequence |
Dno-Mir-28-P1_3p |
mirBase accession | MIMAT0047548 |
Sequence |
40- CACUAGAUUGUGAGCUCCUGGA -62
Get sequence
|