MirGeneDB ID | Dno-Mir-499 |
Family name |
MIR-499 (all species) |
Seed |
UAAGACU |
Species |
Nine-banded armadillo (Dasypus novemcinctus) |
MiRBase ID |
dno-mir-499
|
Paralogues |
|
Orthologues |
Aca-Mir-499
Ami-Mir-499
Bta-Mir-499
Cfa-Mir-499
Cli-Mir-499
Cpi-Mir-499
Cpo-Mir-499
Dre-Mir-499-P1
Dre-Mir-499-P2
Ebu-Mir-499
Ete-Mir-499
Gga-Mir-499
Gja-Mir-499
Gmo-Mir-499-P1
Hsa-Mir-499
Lch-Mir-499
Loc-Mir-499
Mal-Mir-499-P1
Mdo-Mir-499
Mml-Mir-499
Mmu-Mir-499
Mun-Mir-499
Oan-Mir-499
Ocu-Mir-499
Pbv-Mir-499
Pma-Mir-499
Rno-Mir-499
Sha-Mir-499
Spt-Mir-499
Sto-Mir-499
Tgu-Mir-499
Tni-Mir-499-P1
Xla-Mir-499-P3
Xla-Mir-499-P4
Xtr-Mir-499
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (dasNov3) |
JH566087: 1156711-1156769 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCUGUCCCCUGCGCCCUGGGCGGGUGGCCGUUAAGACUUGCAGUGAUGUUUAACUCCUCUGCAUGUGAACAUCACAGCAAGUCUGUGCUGCCUCCCGUCCCUACGCUGCCUGAGCAGGG
Get precursor sequence
|
Structure | 10 20 30 40 50
UCUGUCCCCUGCGCCCU--| U C UA A ACUCCU
GGGCGGG GGC GU AGACUUGC GUGAUGUUUA \
CCUGCCC CCG CG UCUGAACG CACUACAAGU C
GGGACGAGUCCGUCGCAUC^ U U UG A GUACGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut +1 on the 3p arm. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Dno-Mir-499_5p |
mirBase accession | MIMAT0047936 |
Sequence |
0- UUAAGACUUGCAGUGAUGUUUA -22
Get sequence
|
Star sequence |
Dno-Mir-499_3p* |
mirBase accession | MIMAT0047937 |
Sequence |
37- AACAUCACAGCAAGUCUGUGCU -59
Get sequence
|