MirGeneDB 2.1

MirGeneDB ID

Dno-Mir-873-v2

Family name MIR-873 (all species)
Seed CAGGAAC
Species Nine-banded armadillo (Dasypus novemcinctus)
MiRBase ID dno-mir-873
Paralogues Dno-Mir-873-v1 
Orthologues Bta-Mir-873-v2  Cfa-Mir-873-v2  Cpo-Mir-873-v2  Ete-Mir-873-v2  Hsa-Mir-873-v2  Mdo-Mir-873-v2  Mml-Mir-873-v2  Mmu-Mir-873-v2  Oan-Mir-873-v2  Ocu-Mir-873-v2  Rno-Mir-873-v2 
Node of Origin (locus) Mammalia
Node of Origin (family) Mammalia
Genome context
(dasNov3)
JH581283: 597024-597080 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-873-v2)
Mir-873-v1 JH581283: 597023-597081 [+] UCSC Ensembl
Mir-873-v2 JH581283: 597024-597080 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCCUGCUUAAAACAAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGAACAGGAGACUGAUGAGUUCCCGGGAACACCCACAAAUCUUCCUACUUAUUUCUAC
Get precursor sequence
Structure
        10          20        30        40        50        
UGCCUGCUUAAAACAAG--|     UGCAUUUGCA      UG G        AUUGAA 
                   UUUGUG          GGAACU  U AGUCUCCU      \
                   AAACAC          CCUUGA  A UCAGAGGA      A
CAUCUUUAUUCAUCCUUCU^     CCACAAGGGC      GU G        CAAGUA 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Dno-Mir-873-v2_5p

mirBase accessionMIMAT0048016
Sequence
0- GCAGGAACUUGUGAGUCUCCUA -22
Get sequence
Star sequence

Dno-Mir-873-v2_3p*

mirBase accessionMIMAT0048017
Sequence
35- GGAGACUGAUGAGUUCCCGGGA -57
Get sequence