Mir-96-P1

MirGeneDB ID

Dno-Mir-96-P1

Family name

MIR-96 (all species)

Seed

UUGGCAC

Species

Nine-banded armadillo (Dasypus novemcinctus)

MiRBase ID

dno-mir-96

Paralogues

Dno-Mir-96-P2 Dno-Mir-96-P3-v1 Dno-Mir-96-P3-v2

Orthologues

Ami-Mir-96-P1 Bfl-Mir-96-P1 Bla-Mir-96-P1 Bta-Mir-96-P1 Cfa-Mir-96-P1 Cgi-Mir-96-P1h Cgi-Mir-96-P1i Cin-Mir-96-P1 Cli-Mir-96-P1 Cmi-Mir-96-P1 Cpi-Mir-96-P1 Cpo-Mir-96-P1 Csc-Mir-96-P1w Csc-Mir-96-P1x Cte-Mir-96-P1 Dre-Mir-96-P1a Ebu-Mir-96-P1e Ebu-Mir-96-P1f Ebu-Mir-96-P1g Efe-Mir-96-P1 Esc-Mir-96-P1h Ete-Mir-96-P1 Gga-Mir-96-P1 Gja-Mir-96-P1 Gmo-Mir-96-P1a Hsa-Mir-96-P1 Isc-Mir-96-P1 Lan-Mir-96-P1 Lch-Mir-96-P1 Lgi-Mir-96-P1h Lgi-Mir-96-P1i Loc-Mir-96-P1 Lpo-Mir-96-P1r-v1 Lpo-Mir-96-P1r-v2 Lpo-Mir-96-P1s Lpo-Mir-96-P1t Lpo-Mir-96-P1u Mal-Mir-96-P1a Mal-Mir-96-P1b Mdo-Mir-96-P1 Mml-Mir-96-P1 Mmu-Mir-96-P1 Mun-Mir-96-P1 Npo-Mir-96-P1h Npo-Mir-96-P1i Oan-Mir-96-P1 Ocu-Mir-96-P1 Ovu-Mir-96-P1h Pbv-Mir-96-P1 Pfl-Mir-96-P1 Pma-Mir-96-P1o1 Pma-Mir-96-P1o2 Pmi-Mir-96-P1 Rno-Mir-96-P1 Sha-Mir-96-P1 Sko-Mir-96-P1 Sme-Mir-96-P1j Sme-Mir-96-P1k Spt-Mir-96-P1 Spu-Mir-96-P1 Sto-Mir-96-P1 Tgu-Mir-96-P1 Tni-Mir-96-P1a Tni-Mir-96-P1b Xbo-Mir-96-P1 Xla-Mir-96-P1c Xla-Mir-96-P1d Xtr-Mir-96-P1

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(dasNov3)

JH568910: 1128922-1128985 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P1)

Mir-96-P2 JH568910: 1124861-1124925 [-] UCSC Ensembl
Mir-96-P1 JH568910: 1128922-1128985 [-] UCSC Ensembl
Mir-96-P3-v1 JH568910: 1129147-1129208 [-] UCSC Ensembl
Mir-96-P3-v2 JH568910: 1129148-1129207 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GACCGAACCAGGACCAUCUGCUUGGCCGAUUUUGGCACUAGCACAUUUUUGCUUGUCUCUCUCUGCUCUGAGCAAUCAUGUGCAGUGCCAAUAUGGGAGAAGCGGGACACCCAGCCGAGCCUAC

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Structure

        10          20        30        40        50        60  
GACCGAACCAGGACCAU--|     GG  G  U        A      UU     UGUCUCUC 
                   CUGCUU  CC AU UUGGCACU GCACAU  UUGCU        \
                   GGCGAA  GG UA AACCGUGA CGUGUA  AACGA        U
CAUCCGAGCCGACCCACAG^     GA  G  U        -      CU     GUCUCGUC 
  120       110       100        90         80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Dno-Mir-96-P1_5p

mirBase accession

MIMAT0047590

Sequence

0- UUUGGCACUAGCACAUUUUUGCU -23

Get sequence

Star sequence

Dno-Mir-96-P1_3p*

mirBase accession

MIMAT0047591

Sequence

42- CAAUCAUGUGCAGUGCCAAUAU -64

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