MirGeneDB ID | Dpu-Novel-3 |
Family name |
DPU-NOVEL-3 (all species) |
Seed |
UGCACUG |
Species |
Common water flea (Daphnia pulex) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
Daphnia
|
Node of Origin (family) |
Daphnia
|
Genome context (Daphnia_pulex.V1.0) |
DAPPUscaffold_13: 1740035-1740097 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAGAUUUAAAAAGAUCGAACGACGACACUGACUUCGAGCCGACCAGUUGCUUUGUGGCAUCAAGACUUCAUUGCACUGUACGGUUCGAGGCGAAUGUCUCGUUGAAUAAACUACGAAUUUAAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAGAUUUAAAAAGAUCG---| C C- A AC U UU UGGCAU
AACGA GACA UG CUUCGAGCCG CAGU GC UG C
UUGCU CUGU GC GGAGCUUGGC GUCA CG AC A
UAAUUUAAGCAUCAAAUAAG^ - AA - AU - UU UUCAGA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Dpu-Novel-3_5p* |
mirBase accession | None |
Sequence |
0- ACUUCGAGCCGACCAGUUGCUUUG -24
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|
Mature sequence |
Dpu-Novel-3_3p |
mirBase accession | None |
Sequence |
40- UUGCACUGUACGGUUCGAGGCGA -63
Get sequence
|