MirGeneDB ID | Dya-Mir-1175-P3 |
Family name |
MIR-1175 (all species) |
Seed |
GAGAUUC |
Species |
Fruit fly (Drosophila yakuba) |
MiRBase ID |
|
Paralogues |
Dya-Mir-1175-P4
|
Orthologues |
Aae-Mir-1175
Asu-Mir-1175
Bge-Mir-1175
Bpl-Mir-1175
Cgi-Mir-1175
Cte-Mir-1175
Dan-Mir-1175
Dma-Mir-1175
Dme-Mir-1175
Dmo-Mir-1175
Dpu-Mir-1175
Dsi-Mir-1175
Hme-Mir-1175
Isc-Mir-1175
Lan-Mir-1175
Lgi-Mir-1175
Npo-Mir-1175
Obi-Mir-1175
Ovu-Mir-1175
Tca-Mir-1175
|
Node of Origin (locus) |
D. yakuba
|
Node of Origin (family) |
Protostomia
|
Genome context (Drosophila_yakuba.dyak_caf1.dna.toplevel) |
3L: 23128670-23128733 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGAUUUUCCACGAUCGGCGUGUCUUUGGCAAGUAGAAUAGCAGGCUUAUCACAUGUUUAACUCAAUCUGCUGUGAGAUUCUUCUAUUCUACUUUCGACAACACCCGUUAACAUCGAACCCCGAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GGAUUUUCCACGAUCGGC---| CU C C CUUA UGUUUAAC
GUGU UUGG AAGUAGAAUAG AGG UCACA \
CACA AGCU UUCAUCUUAUC UCU AGUGU U
CAGCCCCAAGCUACAAUUGCC^ AC - U UAG- CGUCUAAC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Dya-Mir-1175-P3_5p* |
mirBase accession | None |
Sequence |
0- AGUAGAAUAGCAGGCUUAUCACA -23
Get sequence
|
Mature sequence |
Dya-Mir-1175-P3_3p |
mirBase accession | None |
Sequence |
42- UGAGAUUCUUCUAUUCUACUUU -64
Get sequence
|