Mir-279-P2

MirGeneDB ID

Dya-Mir-279-P2

Family name

MIR-279 (all species)

Seed

GACUAGA

Species

Fruit fly (Drosophila yakuba)

MiRBase ID

dya-mir-286

Paralogues

Dya-Mir-279-P1 Dya-Mir-279-P3

Orthologues

Aae-Mir-279-P2a Aae-Mir-279-P2b1 Aae-Mir-279-P2b2 Bpl-Mir-279 Cgi-Mir-279 Dan-Mir-279-P2 Dma-Mir-279-o2 Dme-Mir-279-P2 Dmo-Mir-279-P2 Dpu-Mir-279-o2 Dsi-Mir-279-P2 Esc-Mir-279 Isc-Mir-279 Lgi-Mir-279 Npo-Mir-279 Obi-Mir-279 Ovu-Mir-279

Node of Origin (locus)

Diptera

Node of Origin (family)

Protostomia

Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel)

2R: 13623775-13623848 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-279-P2)

Mir-3-P2 2R: 13623513-13623571 [+] UCSC Ensembl
Mir-3-P1 2R: 13623628-13623684 [+] UCSC Ensembl
Mir-279-P2 2R: 13623775-13623848 [+] UCSC Ensembl
Mir-9-P9 2R: 13623927-13623983 [+] UCSC Ensembl
Mir-2-P5 2R: 13624064-13624124 [+] UCSC Ensembl
Mir-2-P6a 2R: 13624211-13624273 [+] UCSC Ensembl
Mir-2-P6b 2R: 13624349-13624410 [+] UCSC Ensembl
Mir-2-P6c 2R: 13624497-13624562 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUUAUAGGCACUCCAGUUUUAAAAUUGAAUGGCGAAUGUCGGUAUGGUCUCUUUUUCAAAAGAGGUUUCGAUCAAGCGAAGUGACUAGACCGAACACUCGUGCUAUAAUUUUAAAAUAUUCAACAUGCUCAGUG

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Structure

        10          20        30         40        50        60      
GUUAUAGGCACUCCAGU--          AAUG    A  -|    A     U  UUUUCAAAAGAGG 
                   UUUAAAAUUG    GCGA UG UCGGU UGGUC CU             \
                   AAAUUUUAAU    UGCU AC AGCCA AUCAG GA             U
GUGACUCGUACAACUUAUA          AUCG    C  A^    G     U  AGCGAACUAGCUU 
  130       120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

He	Wh

Star sequence

Dya-Mir-279-P2_5p*

mirBase accession

None

Sequence

0- GGCGAAUGUCGGUAUGGUCUCU -22

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Mature sequence

Dya-Mir-279-P2_3p

mirBase accession

MIMAT0009109

Sequence

51- UGACUAGACCGAACACUCGUGCU -74

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