MirGeneDB ID | Dya-Mir-4969 |
Family name |
MIR-4969 (all species) |
Seed |
GGUAAAU |
Species |
Fruit fly (Drosophila yakuba) |
MiRBase ID |
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Paralogues |
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Orthologues |
Dme-Mir-4969
Dsi-Mir-4969
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Node of Origin (locus) |
D. melanogaster subgroup
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Node of Origin (family) |
D. melanogaster subgroup
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Genome context (Drosophila_yakuba.dyak_caf1.dna.toplevel) |
3R: 18444241-18444357 [-]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
AUAUAUAUAUGUAUGGAUUUUUCGGCGUGGCGGUAAAUUGAAUGAUGAGUGGGAGGAUGUCGCAGCCAUUGUUUGGCUGAUAAGGGAGCCUGGCGCACUAUUACCUGGCCCUCUGAAACGAGAGCCCACCUGUCAAUCAAUACCACCCCGCCGAACCGACAUCAUCAUAAUAAUCAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70 80
AUAUAUAUAUGUAUGGAUUU--| U C AA A GA AGGAUGUCGCAGCCAUUGUUUGGCUGAUAAGGGAG
UUCGGCG GG GGUA UUGA UGAU GUGGG \
AAGCCGC CC CCAU AACU ACUG CACCC C
UACUAAUAAUACUACUACAGCC^ C A -- A UC GAGAGCAAAGUCUCCCGGUCCAUUAUCACGCGGUC
170 160 150 140 130 120 110 100 90 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Mature sequence |
Dya-Mir-4969_5p |
mirBase accession | None |
Sequence |
0- CGGUAAAUUGAAUGAUGAGUGGGA -24
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|
Star sequence |
Dya-Mir-4969_3p* |
mirBase accession | None |
Sequence |
95- CCACCUGUCAAUCAAUACCACC -117
Get sequence
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