MirGeneDB ID | Dya-Mir-956-v2 |
Family name |
MIR-956 (all species) |
Seed |
UCGAGAC |
Species |
Fruit fly (Drosophila yakuba) |
MiRBase ID |
|
Paralogues |
Dya-Mir-956-v1
|
Orthologues |
Dan-Mir-956-v2
Dme-Mir-956-v2
Dmo-Mir-956-v2
Dsi-Mir-956-v2
|
Node of Origin (locus) |
Drosophila
|
Node of Origin (family) |
Drosophila
|
Genome context (Drosophila_yakuba.dyak_caf1.dna.toplevel) |
3L: 11795685-11795813 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUGAUAUGUGCACUUUUCCUGAUCGUUAUCGUGUUUGGAAUGGUCUCGUUAGCUAACGGAUGAGCAAGUGCUCGGCUCACUGGCCCAAAUGCAGUUUGCCCGGAGGAGCCGGUUUACCCAGCACUCAAGUGUGUAGUUUCGAGACCACUCUAAUCCAUUGCACCAUUUUCCACUAUAUGCAAAUUCGCC
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70 80 90
UUGAUAUGUGCACUUUUCCUGAUCGUUAUC ------| A UU UAACGGAUGAGCAAGUGCUCGGCUCACUGGCCCAAAUGCA
GUGU UUGGA UGGUCUCG AGC G
CACG AAUCU ACCAGAGC UUG U
CCGCUUAAACGUAUAUCACCUUUUAC---- UUACCU^ C U- AUGUGUGAACUCACGACCCAUUUGGCCGAGGAGGCCCGUU
180 170 160 150 140 130 120 110 100 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Dya-Mir-956-v2_5p* |
mirBase accession | None |
Sequence |
0- GUGUUUGGAAUGGUCUCGUUAGC -23
Get sequence
|
Mature sequence |
Dya-Mir-956-v2_3p |
mirBase accession | None |
Sequence |
107- UUCGAGACCACUCUAAUCCAUU -129
Get sequence
|