| MirGeneDB ID | Ebu-Mir-27-P6 |
|---|
| Family name |
MIR-27 (all species) |
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| Seed |
UCACAGU |
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| Species |
Inshore hagfish (Eptatretus burgeri) |
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| MiRBase ID |
|
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| Paralogues |
Ebu-Mir-27-P5
|
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| Orthologues |
|
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| Node of Origin (locus) |
E. burgeri
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(Eburgeri_3) |
FYBX02009928.1: 2217985-2218048 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GCUUUUUGAAGGACUUUGCCUCCUCUGGUGCGGGGCUUGGCUCACUUGUGAACACUGCUGUAUUUUAUCCUGUUCACAGUGGCUAAGUUCUGCACUCGGGCUGGCUCUCCUCCACUGUCUUAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GCUUUUUGAAGGACUUU--| UC U U U CUGCUGU
GCC CUC GGUGCGGGGCUUGGC CACU GUGAACA A
CGG GGG UCACGUCUUGAAUCG GUGA CACUUGU U
UAAUUCUGUCACCUCCUCU^ UC C - - CCUAUUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Ebu-Mir-27-P6_5p* |
| mirBase accession | None |
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| Sequence |
0- CGGGGCUUGGCUCACUUGUGAACA -24
Get sequence
|
|---|
| Mature sequence |
Ebu-Mir-27-P6_3p |
| mirBase accession | None |
|---|
| Sequence |
42- UUCACAGUGGCUAAGUUCUGCA -64
Get sequence
|
|---|
