MirGeneDB ID | Ete-Mir-103-P2 |
Family name |
MIR-103 (all species) |
Seed |
GCAGCAU |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-103-P1
Ete-Mir-103-P4
|
Orthologues |
Aca-Mir-103-P2
Ami-Mir-103-P2
Bta-Mir-103-P2
Cfa-Mir-103-P2
Cli-Mir-103-P2
Cmi-Mir-103-P2
Cpi-Mir-103-P2
Cpo-Mir-103-P2
Dno-Mir-103-P2
Dre-Mir-103-P2a
Dre-Mir-103-P2b
Gga-Mir-103-P2
Gja-Mir-103-P2
Gmo-Mir-103-P2a
Gmo-Mir-103-P2b
Hsa-Mir-103-P2
Lch-Mir-103-P2
Loc-Mir-103-P2
Mal-Mir-103-P2a
Mal-Mir-103-P2b
Mdo-Mir-103-P2
Mml-Mir-103-P2
Mmu-Mir-103-P2
Mun-Mir-103-P2
Oan-Mir-103-P2
Ocu-Mir-103-P2
Pbv-Mir-103-P2
Pfl-Mir-103
Pma-Mir-103-o2
Pmi-Mir-103
Rno-Mir-103-P2
Sha-Mir-103-P2
Sko-Mir-103
Spt-Mir-103-P2
Spu-Mir-103
Sto-Mir-103-P2
Tgu-Mir-103-P2
Tni-Mir-103-P2a
Tni-Mir-103-P2b
Xbo-Mir-103
Xla-Mir-103-P2c
Xla-Mir-103-P2d
Xtr-Mir-103-P2
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Deuterostomia
|
Genome context (echTel2) |
JH980296: 19486868-19486927 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
AGCUAUGCAAAGCUGCUUCUUCGUGCUUUCAGCUUCUUUACAGUGCUGCCUUGUAGCAUUCAGGUCAAGCAGCAUUGUACAGGGCUAUGAAAGAACUAAGAAUGGGCUGCCCGUGGGGAA
Get precursor sequence
|
Structure | 10 20 30 40 50
AGCUAUGCAAAGCUGCU-- C G --| U U C UAGCA
UCUU GU CUUUC AGCU CU UACAGUGCUGC UUG U
AGAA CA GAAAG UCGG GA AUGUUACGACG AAC U
AAGGGGUGCCCGUCGGGUA U A UA^ - C - UGGAC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ete-Mir-103-P2_5p* |
mirBase accession | None |
Sequence |
0- AGCUUCUUUACAGUGCUGCCUUG -23
Get sequence
|
Mature sequence |
Ete-Mir-103-P2_3p |
mirBase accession | None |
Sequence |
37- AGCAGCAUUGUACAGGGCUAUGA -60
Get sequence
|