MirGeneDB ID | Ete-Mir-1388 |
Family name |
MIR-1388 (all species) |
Seed |
GGACUGU |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aca-Mir-1388
Ami-Mir-1388
Bta-Mir-1388
Cfa-Mir-1388
Cli-Mir-1388
Cmi-Mir-1388
Cpi-Mir-1388
Cpo-Mir-1388
Dno-Mir-1388
Dre-Mir-1388
Gga-Mir-1388
Gja-Mir-1388
Gmo-Mir-1388
Lch-Mir-1388
Loc-Mir-1388
Mal-Mir-1388
Mdo-Mir-1388
Mun-Mir-1388
Oan-Mir-1388-v1
Oan-Mir-1388-v2
Pbv-Mir-1388
Sha-Mir-1388
Spt-Mir-1388
Sto-Mir-1388
Tgu-Mir-1388
Tni-Mir-1388
Xla-Mir-1388-P1
Xla-Mir-1388-P2
Xtr-Mir-1388
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Gnathostomata
|
Genome context (echTel2) |
JH980408: 215220-215275 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CUCUCAGCAGGGCCCCUGGGCAGUGCCCCCCGGACUGUCGCCCCUGAGAACGUGAGGCUGCAGGCUCUCAGGCCCGUCAGCCCGUGAGGCGCCGCCCUCUGCAACCAUGACCUCUC
Get precursor sequence
|
Structure | 10 20 30 40 50
CUCUCAGCAGGGCCCCU--| A CCC A U CC ACGUGAG
GGGC GUGCC CGG CUG CG CCUGAGA G
CCCG CGCGG GCC GAC GC GGACUCU C
CUCUCCAGUACCAACGUCU^ C AGU C U CC CGGACGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ete-Mir-1388_5p |
mirBase accession | None |
Sequence |
0- CGGACUGUCGCCCCUGAGAACG -22
Get sequence
|
Star sequence |
Ete-Mir-1388_3p* |
mirBase accession | None |
Sequence |
34- CUCUCAGGCCCGUCAGCCCGUG -56
Get sequence
|