| MirGeneDB ID | Ete-Mir-342 |
|---|
| Family name |
MIR-342 (all species) |
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| Seed |
CUCACAC |
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| Species |
Lesser hedgehog tenrec (Echinops telfairi) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-342
Cfa-Mir-342
Cpo-Mir-342
Dno-Mir-342
Hsa-Mir-342
Mml-Mir-342
Mmu-Mir-342
Ocu-Mir-342
Rno-Mir-342
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(echTel2) |
JH980297: 83287203-83287269 [-]
UCSC
|
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Precursor
(pre-Mir +30nt flank) |
CUCUCCAGCCGGCAACCUGGGUUCAAGGUGAGGGGUGCUGUCUGUGAUUGAGGGACAUGGUACAUGGAACUGUCUCACACAGAAAUCGCACCCGUCUCCUUGGCCUGCCUAGCAACACCCCGGCACU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CUCUCCAGCCGGCAACCU--- U U G UG--| AU GACAUGGUA
GGG UCAAGG GA GGGUGC UCUGUG UGAGG \
UCC GGUUCC CU CCCACG AGACAC ACUCU C
UCACGGCCCCACAACGAUCCG - U G CUAA^ -- GUCAAGGUA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Drosha cut +1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Ete-Mir-342_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGGGUGCUGUCUGUGAUUGAGG -23
Get sequence
|
|---|
| Mature sequence |
Ete-Mir-342_3p |
| mirBase accession | None |
|---|
| Sequence |
42- UCUCACACAGAAAUCGCACCCGUCU -67
Get sequence
|
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