MirGeneDB 2.1

MirGeneDB ID

Ete-Mir-3613

Family name MIR-3613 (all species)
Seed GUUGUAC
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues
Orthologues Bta-Mir-3613  Cfa-Mir-3613  Cpo-Mir-3613  Dno-Mir-3613  Hsa-Mir-3613  Mdo-Mir-3613  Mml-Mir-3613  Ocu-Mir-3613  Sha-Mir-3613 
Node of Origin (locus) Theria
Node of Origin (family) Theria
Genome context
(echTel2)
JH980311: 7380992-7381049 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CAGGACGCGCAAUAGCAGUUGGGUUUGGAUUGUUGUACUUUUUUUUUUGUUCGUUUAAUUUGGAGGAACAAAAAAAAAGCCCAACCCUUCACACCACUUCAUCUGCAUCUCUCGGACC
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Structure
        10        20          30        40        50         
CAGGACGCGCAAUAGCAGUUG--|  U    UU    UA          U    GUUUAA 
                       GGU UGGA  GUUG  CUUUUUUUUU GUUC      \
                       CCA ACUU  CAAC  GAAAAAAAAA CAAG      U
CCAGGCUCUCUACGUCUACUUCA^  C    CC    CC          -    GAGGUU 
      110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Ete-Mir-3613_5p

mirBase accessionNone
Sequence
0- UGUUGUACUUUUUUUUUUGUUC -22
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Star sequence

Ete-Mir-3613_3p*

mirBase accessionNone
Sequence
37- ACAAAAAAAAAGCCCAACCCU -58
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