MirGeneDB ID | Ete-Mir-383-v2 |
Family name |
MIR-383 (all species) |
Seed |
AGAUCAG |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-383-v1
|
Orthologues |
Aca-Mir-383-v2
Ami-Mir-383-v2
Bta-Mir-383-v2
Cfa-Mir-383-v2
Cli-Mir-383-v2
Cpi-Mir-383-v2
Cpo-Mir-383-v2
Dno-Mir-383-v2
Gga-Mir-383-v2
Gja-Mir-383-v2
Hsa-Mir-383-v2
Mdo-Mir-383-v2
Mml-Mir-383-v2
Mmu-Mir-383-v2
Mun-Mir-383
Oan-Mir-383-v2
Ocu-Mir-383-v2
Pbv-Mir-383-v2
Rno-Mir-383-v2
Sha-Mir-383-v2
Spt-Mir-383
Tgu-Mir-383-v2
Xtr-Mir-383-v2
|
Node of Origin (locus) |
Tetrapoda
|
Node of Origin (family) |
Tetrapoda
|
Genome context (echTel2) |
JH980293: 52608066-52608128 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CACUUCAGAAUCUCCACGUCACCUGCUCCUCAGAUCAGAAGGUGAUUGUGGCUUUGGGUGGAUAUUAAUCAGCCACAGCACUGCCUGGUCAGAAAGAGCAAGUGUCCUAGCCUUUUGCCUCAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CACUUCAGAAUCUCCACGU C C-| A AA A UUGGGUGG
CAC UGCUC UC GAUCAG GGUG UUGUGGCU \
GUG ACGAG AG CUGGUC UCAC GACACCGA A
GACUCCGUUUUCCGAUCCU A AA^ A CG - CUAAUUAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Ete-Mir-383-v2_5p |
mirBase accession | None |
Sequence |
0- CAGAUCAGAAGGUGAUUGUGGCU -23
Get sequence
|
Star sequence |
Ete-Mir-383-v2_3p* |
mirBase accession | None |
Sequence |
42- CCACAGCACUGCCUGGUCAGA -63
Get sequence
|