MirGeneDB ID | Ete-Mir-452-v2 |
Family name |
MIR-452 (all species) |
Seed |
GUUUGCA |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-452-v1
|
Orthologues |
Bta-Mir-452-v2
Cfa-Mir-452-v2
Cpo-Mir-452-v2
Hsa-Mir-452-v2
Mml-Mir-452-v2
Mmu-Mir-452-v2
Ocu-Mir-452-v2
Rno-Mir-452-v2
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980398: 3996460-3996516 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CCCAUUUUAUAAAUGCAAAGCACUUACAACUGUUUGCAGAGGAAACUGAGACUUUAUAACCAUGCCUCAGUCUCAUCUGCAAAGAAGUAAGUGCUUUGCCAAUCCCUCAAAAGGGUA
Get precursor sequence
|
Structure | 10 20 30 40 50
CCCAUUUUAUAAAUGCA----| AA GU G A ACUUUAU
AAGCACUUAC CU UUGCAGA GA ACUGAG \
UUCGUGAAUG GA AACGUCU CU UGACUC A
AUGGGAAAACUCCCUAACCGU^ AA -- A C CGUACCA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ete-Mir-452-v2_5p |
mirBase accession | None |
Sequence |
0- UGUUUGCAGAGGAAACUGAGAC -22
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|
Star sequence |
Ete-Mir-452-v2_3p* |
mirBase accession | None |
Sequence |
36- UCAGUCUCAUCUGCAAAGAAG -57
Get sequence
|