MirGeneDB ID | Ete-Mir-483 |
Family name |
MIR-483 (all species) |
Seed |
GGACGGG |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-483-v1
Bta-Mir-483-v2
Cfa-Mir-483
Cpo-Mir-483
Dno-Mir-483
Hsa-Mir-483
Mml-Mir-483
Mmu-Mir-483
Ocu-Mir-483
Rno-Mir-483
Sha-Mir-483
|
Node of Origin (locus) |
Theria
|
Node of Origin (family) |
Theria
|
Genome context (echTel2) |
JH980433: 1921138-1921200 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
UCCAGCUGAGCUGCCCUGGGGGAGGGGGAGAGGACGGGAGGAGAGUAGGGCGUGGUCUUAUCCAACUUCCUCACUCCUCUCCUCCUGUCUUUUCUCCCCCGCCCGCCUGCCCACCCACCCGCC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCCAGCUGAGCUGCCCU-- -| A U - CGUGGUCUU
GGG GG GGGGGAGAGGACGGGAGGAGAG AG GG A
CCC CC CCCUCUUUUCUGUCCUCCUCUC UC CU U
CCGCCCACCCACCCGUCCG G^ - C A CCUUCAACC
120 110 100 90 80 70 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ete-Mir-483_5p |
mirBase accession | None |
Sequence |
0- AGGACGGGAGGAGAGUAGGGCG -22
Get sequence
|
Star sequence |
Ete-Mir-483_3p* (predicted) |
mirBase accession | None |
Sequence |
41- CACUCCUCUCCUCCUGUCUUUU -63
Get sequence
|