MirGeneDB ID | Ete-Mir-505-v1 |
Family name |
MIR-505 (all species) |
Seed |
GGAGCCA |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-505-v2
|
Orthologues |
Bta-Mir-505-v1
Cfa-Mir-505-v1
Cpo-Mir-505-v1
Dno-Mir-505-v1
Hsa-Mir-505-v1
Mml-Mir-505-v1
Mmu-Mir-505-v1
Ocu-Mir-505-v1
Rno-Mir-505-v1
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
JH980367: 5183544-5183602 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CUGCCGGUAGGACAUUGAUGCGCCCAGUGGGGGAGCCAGGAAGUAUUGAUGUUUCCGCCAGUUUAGCAUCAACAUUUGCUGCUUUCCUCUCUGGAGCAUCGCCAAGUGCAUGGAUUUUC
Get precursor sequence
|
Structure | 10 20 30 40 50
CUGCCGGUAGGACAUUG---| GC U C G A UCCGC
AUGC CCAG GGGGGAG CAG AAGU UUGAUGUU \
UACG GGUC CUCCUUU GUC UUUA AACUACGA C
CUUUUAGGUACGUGAACCGC^ A- U C G C UUUGA
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Ete-Mir-505-v1_5p (predicted) |
mirBase accession | None |
Sequence |
0- GGGAGCCAGGAAGUAUUGAUGUU -23
Get sequence
|
Co-mature sequence |
Ete-Mir-505-v1_3p (predicted) |
mirBase accession | None |
Sequence |
36- CAUCAACAUUUGCUGCUUUCCUC -59
Get sequence
|