MirGeneDB ID | Ete-Mir-760 |
Family name |
MIR-760 (all species) |
Seed |
GGCUCUG |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-760
Cpo-Mir-760
Dno-Mir-760
Hsa-Mir-760
Mml-Mir-760
Mmu-Mir-760
Ocu-Mir-760
Rno-Mir-760
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (echTel2) |
scaffold_287966: 11089-11146 [-]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CAGGGACGCUGCGGCACGGGGCGCGUCGCCCCGCUCAGUCCGCCAGAGCGCGGAUGUCUCCGAAAUUCGGCUCUGGGUCUGUGGGGUGCGAAAUGCAACCCCCCUCCCGAGCCCCGCG
Get precursor sequence
|
Structure | 10 20 30 40 50
CAGGGACGCUGCGGCAC- G- CG -| GCU U GC G UGUCU
GG GCG UCGC CCC CAG CC CAGAGC CGGA \
CC CGU AGCG GGG GUC GG GUCUCG GCUU C
GCGCCCCGAGCCCUCCCC AA AA U^ GU- U -- - AAAGC
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Ete-Mir-760_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CCGCUCAGUCCGCCAGAGCGCGGA -24
Get sequence
|
Mature sequence |
Ete-Mir-760_3p |
mirBase accession | None |
Sequence |
37- CGGCUCUGGGUCUGUGGGGUG -58
Get sequence
|