| MirGeneDB ID | Lpo-Mir-317-P12 |
|---|
| Family name |
MIR-317 (all species) |
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| Seed |
GAACACA |
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| Species |
Atlantic horseshoe crab (Limulus polyphemus) |
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| MiRBase ID |
|
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| Paralogues |
Lpo-Mir-317-P13
|
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| Orthologues |
Bge-Mir-317
Cte-Mir-317
Dan-Mir-317
Dma-Mir-317
Dme-Mir-317
Dmo-Mir-317
Dpu-Mir-317
Dsi-Mir-317
Dya-Mir-317
Esc-Mir-317
Hme-Mir-317
Isc-Mir-317
Lgi-Mir-317
Npo-Mir-317
Obi-Mir-317
Ovu-Mir-317
Tca-Mir-317
|
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| Node of Origin (locus) |
L. polyphemus
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013666266.1: 394642-394701 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GAAAGCUCCGGAUGGAACUUGGGAGUAGGCCGAGUACCACGCUGGGUUCACAUGGGACAAGCUUGUGAACACAGCUGGUGGUAUCUCAGUGUAACCCCAAAAUGGACAUCACCUUACACC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAAAGCUCCGGAUGGAAC-- AG G C - --| G UGGGA
UUGGG UA GC GAG UACCAC GCUG GUUCACA \
AACCC AU UG CUC AUGGUG CGAC CAAGUGU C
CCACAUUCCACUACAGGUAA CA G A U GU^ A UCGAA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Lpo-Mir-317-P12_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CGAGUACCACGCUGGGUUCACA -22
Get sequence
|
|---|
| Mature sequence |
Lpo-Mir-317-P12_3p |
| mirBase accession | None |
|---|
| Sequence |
35- UGAACACAGCUGGUGGUAUCUCAGU -60
Get sequence
|
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