MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-181-P2c2

Family name MIR-181 (all species)
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-181-P1a1  Mal-Mir-181-P1b2  Mal-Mir-181-P1c1  Mal-Mir-181-P1c2  Mal-Mir-181-P2a1  Mal-Mir-181-P2b2  Mal-Mir-181-P2c1 
Orthologues Aca-Mir-181-P2c  Ami-Mir-181-P2c  Bta-Mir-181-P2c  Cfa-Mir-181-P2c  Cja-Mir-181-P2c  Cmi-Mir-181-P2c  Cpi-Mir-181-P2c  Dno-Mir-181-P2c  Dre-Mir-181-P2c2  Eca-Mir-181-P2c  Ete-Mir-181-P2c  Gmo-Mir-181-P2c2  Hsa-Mir-181-P2c  Laf-Mir-181-P2c  Lch-Mir-181-P2c  Loc-Mir-181-P2c  Mdo-Mir-181-P2c  Mml-Mir-181-P2c  Mmr-Mir-181-P2c  Mmu-Mir-181-P2c  Mun-Mir-181-P2c  Neu-Mir-181-P2c  Oan-Mir-181-P2c  Ocu-Mir-181-P2c  Pab-Mir-181-P2c  Pbv-Mir-181-P2c  Rno-Mir-181-P2c  Sha-Mir-181-P2c  Sto-Mir-181-P2c  Tni-Mir-181-P2c2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884989.1: 305896-305954 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P2c2)		 Mir-181-P1c2 KV884989.1: 303912-303971 [+] UCSC Ensembl
Mir-181-P2c2 KV884989.1: 305896-305954 [+] UCSC Ensembl
Seed ACAUUCA
Precursor
(pre-Mir +30nt flank)		 
AUAUUUCUGUACCAGUGUGGGUUUCUGGUUCACAUUCAUCGCUGUCGGUGGGUUCAUGAUGCGAUCAACCUGUCGGUCGAUGAAUGACAACCGUGACCAUGCAUGGCUACGUUUCCUGA
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Structure
        10          20        30        40        50        60
AUAUUUCUGUACCAGUGUG--|   UC     CA         CUG    UG    CAUGA 
                     GGUU  UGGUU  CAUUCAUCG   UCGG  GGUU     U
                     CCAG  GCCAA  GUAAGUAGC   GGCU  CCAA     G
AGUCCUUUGCAUCGGUACGUA^   U-     CA         U--    GU    CUAGC 
       110       100         90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-181-P2c2_5p
mirBase accessionNone
Sequence 
0- CACAUUCAUCGCUGUCGGUGGGUU -24
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Star sequence

Mal-Mir-181-P2c2_3p*
mirBase accessionNone
Sequence 
38- CCUGUCGGUCGAUGAAUGACA -59
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