MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-140-P1-v1

Family name MIR-140 (all species)
Seed CCACAGG
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-140
Paralogues Mmu-Mir-140-P1-v2 
Orthologues Aca-Mir-140-P1-v1  Aca-Mir-140-P1-v2  Ami-Mir-140-P1-v1  Ami-Mir-140-P1-v2  Bta-Mir-140-P1-v1  Bta-Mir-140-P1-v2  Cfa-Mir-140-P1-v1  Cfa-Mir-140-P1-v2  Cli-Mir-140-P1-v1  Cli-Mir-140-P1-v2  Cmi-Mir-140-P1-v1  Cmi-Mir-140-P1-v2  Cpi-Mir-140-P1-v1  Cpi-Mir-140-P1-v2  Cpo-Mir-140-P1-v1  Cpo-Mir-140-P1-v2  Dno-Mir-140-P1-v1  Dno-Mir-140-P1-v2  Dre-Mir-140-P1-v1  Dre-Mir-140-P1-v2  Ete-Mir-140-P1-v1  Ete-Mir-140-P1-v2  Gga-Mir-140-P1-v1  Gga-Mir-140-P1-v2  Gja-Mir-140-P1-v1  Gja-Mir-140-P1-v2  Gmo-Mir-140-P1-v1  Gmo-Mir-140-P1-v2  Hsa-Mir-140-P1-v1  Hsa-Mir-140-P1-v2  Lch-Mir-140-P1  Loc-Mir-140-P1-v1  Loc-Mir-140-P1-v2  Mal-Mir-140-P1-v1  Mal-Mir-140-P1-v2  Mdo-Mir-140-P1-v1  Mdo-Mir-140-P1-v2  Mml-Mir-140-P1-v1  Mml-Mir-140-P1-v2  Mun-Mir-140-P1-v1  Mun-Mir-140-P1-v2  Oan-Mir-140-P1-v1  Oan-Mir-140-P1-v2  Ocu-Mir-140-P1-v1  Ocu-Mir-140-P1-v2  Pma-Mir-140-o1  Rno-Mir-140-P1-v1  Rno-Mir-140-P1-v2  Sha-Mir-140-P1-v1  Sha-Mir-140-P1-v2  Spt-Mir-140-P1  Sto-Mir-140-P1-v1  Sto-Mir-140-P1-v2  Tgu-Mir-140-P1-v1  Tgu-Mir-140-P1-v2  Tni-Mir-140-P1-v1  Tni-Mir-140-P1-v2  Xla-Mir-140-P1a-v1  Xla-Mir-140-P1a-v2  Xla-Mir-140-P1b-v1  Xla-Mir-140-P1b-v2  Xtr-Mir-140-P1-v1  Xtr-Mir-140-P1-v2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mm10)
chr8: 107551249-107551310 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-140-P1-v1)
Mir-140-P1-v1 chr8: 107551249-107551310 [+] UCSC Ensembl
Mir-140-P1-v2 chr8: 107551249-107551310 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGCCCUGUGUGUCUCUCUCUGUGUCCUGCCAGUGGUUUUACCCUAUGGUAGGUUACGUCAUGCUGUUCUACCACAGGGUAGAACCACGGACAGGGUACUGGAGCACCCUCUGCAUCGAAGG
Get precursor sequence
Structure
        10         20          30        40        50        60
CCGCCCUGUGUGUCUCU-    -  GU    -| A             A      GUUACGU 
                  CUCU GU  CCUG CC GUGGUUUUACCCU UGGUAG       C
                  GAGG CA  GGAC GG CACCAAGAUGGGA ACCAUC       A
GGAAGCUACGUCUCCCAC    U  UG    A^ -             C      UUGUCGU 
120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Star sequence

Mmu-Mir-140-P1-v1_5p*

mirBase accessionMIMAT0000151
Sequence
0- CAGUGGUUUUACCCUAUGGUAG -22
Get sequence
Proposed targets microrna.org: MIMAT0000151
TargetScanVert: mmu-miR-140-5p
miRDB: MIMAT0000151
Mature sequence

Mmu-Mir-140-P1-v1_3p

mirBase accessionMIMAT0000152
Sequence
40- ACCACAGGGUAGAACCACGGAC -62
Get sequence
Proposed targets microrna.org: MIMAT0000152
TargetScanVert: mmu-miR-140-3p.2
miRDB: MIMAT0000152