Mir-375-P13

MirGeneDB ID

Xla-Mir-375-P13

Family name

MIR-375 (all species)

Seed

UUGUUCG

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-375

Paralogues

Xla-Mir-375-P14

Orthologues

Aae-Mir-375 Aca-Mir-375 Ami-Mir-375 Asu-Mir-375 Bfl-Mir-375 Bge-Mir-375 Bla-Mir-375 Bpl-Mir-375 Bta-Mir-375 Cbr-Mir-375 Cel-Mir-375 Cfa-Mir-375 Cin-Mir-375 Cli-Mir-375 Cpi-Mir-375 Cpo-Mir-375 Cte-Mir-375 Dan-Mir-375 Dma-Mir-375 Dme-Mir-375 Dmo-Mir-375 Dno-Mir-375 Dpu-Mir-375 Dsi-Mir-375 Dya-Mir-375 Ebu-Mir-375 Efe-Mir-375 Esc-Mir-375 Ete-Mir-375 Gga-Mir-375 Gja-Mir-375 Hme-Mir-375 Hsa-Mir-375 Isc-Mir-375 Lan-Mir-375 Lch-Mir-375 Lgi-Mir-375 Loc-Mir-375 Mdo-Mir-375 Mml-Mir-375 Mmu-Mir-375 Npo-Mir-375 Oan-Mir-375 Obi-Mir-375 Ocu-Mir-375 Ovu-Mir-375 Pbv-Mir-375 Pfl-Mir-375 Pmi-Mir-375 Rno-Mir-375 Sha-Mir-375 Sko-Mir-375 Spt-Mir-375 Spu-Mir-375 Sto-Mir-375 Tca-Mir-375 Tgu-Mir-375 Xtr-Mir-375

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030740.1: 52366618-52366675 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGUGAGCCACACUAGCUCUGUACUUGCCUGACGUCGAGCCAGACGUGCAAUGCUUUGUAACAACGUUUUGUUCGUUCGGCUCGCGUUAAGCAGGUGCGGCUUGUCUGCUGUCUGUGGU

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Structure

        10          20        30        40        50         
GGUGAGCCACACUAGCU--|         C     U      AG   U    U  UUUGU 
                   CUGUACUUGC UGACG CGAGCC  ACG GCAA GC     \
                   GGCGUGGACG AUUGC GCUCGG  UGC UGUU UG     A
UGGUGUCUGUCGUCUGUUC^         A     -      CU   U    U  CAACA 
      110       100        90         80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	He	Re	St	St	St	St

Star sequence

Xla-Mir-375-P13_5p*

mirBase accession

MIMAT0046590

Sequence

0- ACGUCGAGCCAGACGUGCAAUGC -23

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Mature sequence

Xla-Mir-375-P13_3p

mirBase accession

MIMAT0046591

Sequence

36- UUUGUUCGUUCGGCUCGCGUUA -58

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