MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-130-P1b

Family name MIR-130 (all species)
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-130c
Paralogues Ami-Mir-130-P1a  Ami-Mir-130-P1c  Ami-Mir-130-P2a  Ami-Mir-130-P2b  Ami-Mir-130-P3a 
Orthologues Aca-Mir-130-P1b  Cli-Mir-130-P1b  Cmi-Mir-130-P1b  Cpi-Mir-130-P1b  Dre-Mir-130-P1b1  Gga-Mir-130-P1b  Gja-Mir-130-P1b  Lch-Mir-130-P1b  Loc-Mir-130-P1b  Mdo-Mir-130-P1b  Mun-Mir-130-P1b  Oan-Mir-130-P1b  Pbv-Mir-130-P1b  Sha-Mir-130-P1b  Spt-Mir-130-P1b  Sto-Mir-130-P1b  Tgu-Mir-130-P1b  Xla-Mir-130-P1b3  Xla-Mir-130-P1b4  Xtr-Mir-130-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017711418.1: 14072665-14072727 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-130-P1b)		 Mir-130-P1b NW_017711418.1: 14072665-14072727 [+] UCSC
Mir-130-P2b NW_017711418.1: 14073256-14073317 [+] UCSC
Seed AGUGCAA
Precursor
(pre-Mir +30nt flank)		 
UUUAUUCUUGGUGCAUAGUGUCUGUCCAGUGCCCUUUUUAUGUUGUACUACUAGUGAUCGUGCACAAAAAGCAGUGCAAUGUUAAAAGGGCAUUGGCCAGCAAUACUGUCUACAUUACUAGUC
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Structure
        10           20        30        40        50        60 
UUUAUUCUUGGUGCAUAG---| U   U             U          A  AGUGAUCG 
                     UG CUG CCAGUGCCCUUUU AUGUUGUACU CU        \
                     AC GAC GGUUACGGGAAAA UGUAACGUGA GA        U
CUGAUCAUUACAUCUGUCAUA^ -   C             U          C  AAAACACG 
 120       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Ami-Mir-130-P1b_5p* (predicted)
mirBase accessionNone
Sequence 
0- GCCCUUUUUAUGUUGUACUACU -22
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Mature sequence

Ami-Mir-130-P1b_3p
mirBase accessionMIMAT0038143
Sequence 
41- CAGUGCAAUGUUAAAAGGGCAU -63
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