MirGeneDB ID | Bge-Mir-2-P1-v2 |
Family name |
MIR-2 (all species) |
Seed |
CACAGCC |
Species |
Cockroach (Blattella germanica) |
MiRBase ID |
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Paralogues |
Bge-Mir-2-P1-v1
Bge-Mir-2-P2
Bge-Mir-2-P3
Bge-Mir-2-P4c-v1
Bge-Mir-2-P4c-v2
Bge-Mir-2-P4d-v1
Bge-Mir-2-P4d-v2
Bge-Mir-2-P7
|
Orthologues |
Aae-Mir-2-P1-v1
Aae-Mir-2-P1-v2
Csc-Mir-2-P1n
Csc-Mir-2-P1o
Dan-Mir-2-P1-v1
Dan-Mir-2-P1-v2
Dma-Mir-2-o1
Dma-Mir-2-P1
Dme-Mir-2-P1-v1
Dme-Mir-2-P1-v2
Dmo-Mir-2-P1
Dpu-Mir-2-o1
Dpu-Mir-2-P1
Dsi-Mir-2-P1-v1
Dsi-Mir-2-P1-v2
Dya-Mir-2-P1-v1
Dya-Mir-2-P1-v2
Hme-Mir-2-P1-v1
Hme-Mir-2-P1-v2
Isc-Mir-2-P1
Lpo-Mir-2-P1g
Lpo-Mir-2-P1h
Lpo-Mir-2-P1i
Lpo-Mir-2-P1j
Lpo-Mir-2-P1k
Lpo-Mir-2-P1l
Lpo-Mir-2-P1m
Tca-Mir-2-P1-v1
Tca-Mir-2-P1-v2
|
Node of Origin (locus) |
Arthropoda
|
Node of Origin (family) |
Protostomia
|
Genome context (Bger_2.0) |
KZ615136.1: 496135-496196 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUUGUCACCGAGAAGUUGAGCAGUGUUCUGGCAUCAAAUCUGGUUUGUCAUAGAUUGCUUGAGUCCACUAUCACAGCCAGCUUUGAUGAGCAGAAAGUUGUCUCUAUAAUCUGUUGGAUCAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUUGUCACCGAGAAGUU- - UG G-| U U C GAUUGCU
GAG CAG UUCUG CAUCAAA CUGGUU GU AUA U
CUC GUU AAGAC GUAGUUU GACCGA CA UAU G
CACUAGGUUGUCUAAUAU U GA GA^ C - C CACCUGA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
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Ad |
Ad |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
Co |
Co |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
No |
No |
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Star sequence |
Bge-Mir-2-P1-v2_5p* |
mirBase accession | None |
Sequence |
0- GCAUCAAAUCUGGUUUGUCAUA -22
Get sequence
|
Mature sequence |
Bge-Mir-2-P1-v2_3p |
mirBase accession | None |
Sequence |
40- UCACAGCCAGCUUUGAUGAGCA -62
Get sequence
|