MirGeneDB ID | Csc-Mir-2-P1o |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Arizona bark scorpion (Centruroides sculpturatus) |
MiRBase ID |
|
Paralogues |
Csc-Mir-2-P1n
Csc-Mir-2-P2o
Csc-Mir-2-P3n
Csc-Mir-2-P3o
Csc-Mir-2-P4n
Csc-Mir-2-P4o
|
Orthologues |
Aae-Mir-2-P1-v1
Aae-Mir-2-P1-v2
Bge-Mir-2-P1-v1
Bge-Mir-2-P1-v2
Dan-Mir-2-P1-v1
Dan-Mir-2-P1-v2
Dma-Mir-2-o1
Dma-Mir-2-P1
Dme-Mir-2-P1-v1
Dme-Mir-2-P1-v2
Dmo-Mir-2-P1
Dpu-Mir-2-o1
Dpu-Mir-2-P1
Dsi-Mir-2-P1-v1
Dsi-Mir-2-P1-v2
Dya-Mir-2-P1-v1
Dya-Mir-2-P1-v2
Hme-Mir-2-P1-v1
Hme-Mir-2-P1-v2
Isc-Mir-2-P1
Tca-Mir-2-P1-v1
Tca-Mir-2-P1-v2
|
Node of Origin (locus) |
C. sculpturatus
|
Node of Origin (family) |
Protostomia
|
Genome context (GCF_000671375.1_CSC) |
NW_019384652.1: 447943-448006 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUGAAUUUUAUUUCAUGGGUCUGGUAUAGCCAUCAAAGAGACUGUGAAAUGUGUAAUUUUAAAAGAACAUAUCACAGCCACCUUUGAUGAGCUGGACAAGAUCUUAUUUCUACAAUUACAAAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUUGAAUUUUAUUUCAU-- G A - AGA-| A UGUAAUU
GGGUCU GU UAGC CAUCAAAG CUGUGA AUG U
UCUAGA CA GUCG GUAGUUUC GACACU UAC U
GAAACAUUAACAUCUUUAU A G A CACC^ A AAGAAAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Csc-Mir-2-P1o_5p* |
mirBase accession | None |
Sequence |
0- CCAUCAAAGAGACUGUGAAAUG -22
Get sequence
|
Mature sequence |
Csc-Mir-2-P1o_3p |
mirBase accession | None |
Sequence |
40- UAUCACAGCCACCUUUGAUGAGCU -64
Get sequence
|