MirGeneDB ID | Cli-Mir-33-P3 |
Family name |
MIR-33 (all species) |
Seed |
UGCAUUG |
Species |
Rock pigeon (Columba livia) |
MiRBase ID |
cli-mir-33-1
|
Paralogues |
Cli-Mir-33-P1
|
Orthologues |
Aae-Mir-33
Aca-Mir-33-P3
Ami-Mir-33-P3
Bge-Mir-33
Bta-Mir-33-P3
Cfa-Mir-33-P3
Cgi-Mir-33
Cin-Mir-33
Cmi-Mir-33-P3
Cpi-Mir-33-P3
Cpo-Mir-33-P3
Csc-Mir-33
Cte-Mir-33
Dan-Mir-33
Dma-Mir-33
Dme-Mir-33
Dmo-Mir-33
Dno-Mir-33-P3
Dpu-Mir-33
Dsi-Mir-33
Dya-Mir-33
Ebu-Mir-33
Efe-Mir-33
Esc-Mir-33
Ete-Mir-33-P3
Gga-Mir-33-P3
Gja-Mir-33-P3
Hsa-Mir-33-P3
Isc-Mir-33
Lch-Mir-33-P3
Lgi-Mir-33
Loc-Mir-33-P3
Mal-Mir-33-P3
Mdo-Mir-33-P3
Mml-Mir-33-P3
Mmu-Mir-33-P3
Mun-Mir-33-P3
Npo-Mir-33
Oan-Mir-33-P3
Obi-Mir-33
Ocu-Mir-33-P3
Ovu-Mir-33
Pbv-Mir-33-P3
Pfl-Mir-33
Pma-Mir-33-o3
Pmi-Mir-33
Rno-Mir-33-P3
Sha-Mir-33-P3
Sko-Mir-33
Spt-Mir-33-P3
Spu-Mir-33
Sto-Mir-33-P3
Tca-Mir-33
Tgu-Mir-33-P3
Tni-Mir-33-P3
Xbo-Mir-33
Xla-Mir-33-P3a
Xla-Mir-33-P3b
Xtr-Mir-33-P3
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (colLiv2) |
scaffold1086: 144834-144894 [-]
|
Precursor (pre-Mir +30nt flank) |
CCCUUCUGUCGCUCCUGGGUGGCAGCUGUAGUGCAUUGUAGUUGCAUUGCAUGUUGUGGCAGUAACUGUGCAAUGUUCCUGCAGUGCAGUACAGAGGCACUCUCUGCUUCAGCAGCUCAGG
Get precursor sequence
|
Structure | 10 20 30 40 50
CCCUUCUGUCGCUCCUG---| G AG G UU UGUUGUGG
GGUG C CUGUA UGCAUUGUAG GCAUUGCA \
UCAC G GACAU ACGUGACGUC UGUAACGU C
GGACUCGACGACUUCGUCUC^ - GA G CU GUCAAUGA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | The 3p arm is also monoadenylated at the 3' end. |
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Cli-Mir-33-P3_5p |
mirBase accession | MIMAT0038464 |
Sequence |
0- GUGCAUUGUAGUUGCAUUGCA -21
Get sequence
|
Star sequence |
Cli-Mir-33-P3_3p* |
mirBase accession | MIMAT0038465 |
Sequence |
40- CAAUGUUCCUGCAGUGCAGUA -61
Get sequence
|