MirGeneDB ID | Csc-Iab-4-P6 |
Family name |
IAB-4 (all species) |
Seed |
CGUAUAC |
Species |
Arizona bark scorpion (Centruroides sculpturatus) |
MiRBase ID |
|
Paralogues |
Csc-Iab-4-P7
|
Orthologues |
Bge-Iab-4
Dan-Iab-4
Dma-Iab-4
Dme-Iab-4
Dmo-Iab-4
Dpu-Iab-4
Dsi-Iab-4
Dya-Iab-4
Hme-Iab-4
Isc-Iab-4
Tca-Iab-4
|
Node of Origin (locus) |
C. sculpturatus
|
Node of Origin (family) |
Arthropoda
|
Genome context (GCF_000671375.1_CSC) |
NW_019384315.1: 245440-245497 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCUUCGAGAAGAUUUUGUAGUUCCUCCUGUUCGUAUACUGAAUGUAUCCUGAGUGGUAUAUUUUCCGGUAUACCUUCAGUAUACGUAGCAGGGAGAACUGAUACUGCAUCAGAACUGA
Get precursor sequence
|
Structure | 10 20 30 40 50
UCUUCGAGAAGAUUUUG- CU - U -| U GUGGU
UAGUUC CCUGUU CGUAUACUGAA GUAU CC GA \
GUCAAG GGACGA GCAUAUGACUU CAUA GG CU A
AGUCAAGACUACGUCAUA AG U C U^ C UUUAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Csc-Iab-4-P6_5p |
mirBase accession | None |
Sequence |
0- UCGUAUACUGAAUGUAUCCUGA -22
Get sequence
|
Star sequence |
Csc-Iab-4-P6_3p* |
mirBase accession | None |
Sequence |
36- GGUAUACCUUCAGUAUACGUAG -58
Get sequence
|