MirGeneDB ID | Dmo-Iab-4 |
Family name |
IAB-4 (all species) |
Seed |
CGUAUAC |
Species |
Fruit fly (Drosophila mojavensis) |
MiRBase ID |
dmo-mir-iab-4
|
Paralogues |
Dmo-Iab-4-as
|
Orthologues |
Aae-Iab-4-P1
Aae-Iab-4-P1-as
Aae-Iab-4-P2
Aae-Iab-4-P2-as
Bge-Iab-4
Bge-Iab-4-as
Csc-Iab-4-P6
Csc-Iab-4-P7
Dan-Iab-4
Dan-Iab-4-as
Dma-Iab-4
Dme-Iab-4
Dme-Iab-4-as
Dpu-Iab-4
Dpu-Iab-4-as
Dsi-Iab-4
Dsi-Iab-4-as
Dya-Iab-4
Dya-Iab-4-as
Hme-Iab-4
Hme-Iab-4-as
Isc-Iab-4
Lpo-Iab-4-P3
Lpo-Iab-4-P3-as
Lpo-Iab-4-P4
Lpo-Iab-4-P5
Lpo-Iab-4-P5-as
Tca-Iab-4
Tca-Iab-4-as
|
Node of Origin (locus) |
Arthropoda
|
Node of Origin (family) |
Arthropoda
|
Genome context (Dmoj_caf1) |
scaffold_6540: 1943750-1943806 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCGAAUUGUUGAGCCUGUGCAACUUCGUAUACGUAUACUGAAUGUAUCCUGAGUGUAUCCUAUCCGGUAUACCUUCAGUAUACGUAACACGAGGAAACACCAGCAACGCGGGAUGUG
Get precursor sequence
|
Structure | 10 20 30 40 50
GCGAAUUGUUGAGCCUGUGCAA- A- U -| U GUGU
CUUCGU UACGUAUACUGAA GUAU CC GA A
GGAGCA AUGCAUAUGACUU CAUA GG CU U
GUGUAGGGCGCAACGACCACAAA CA C U^ C AUCC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Dmo-Iab-4_5p |
mirBase accession | MIMAT0008680 |
Sequence |
0- ACGUAUACUGAAUGUAUCCUGA -22
Get sequence
|
Star sequence |
Dmo-Iab-4_3p* |
mirBase accession | MIMAT0008681 |
Sequence |
35- GGUAUACCUUCAGUAUACGUAA -57
Get sequence
|