MirGeneDB ID | Csc-Mir-1-P19 |
Family name |
MIR-1 (all species) |
Seed |
GGAAUGU |
Species |
Arizona bark scorpion (Centruroides sculpturatus) |
MiRBase ID |
|
Paralogues |
Csc-Mir-1-P18a
Csc-Mir-1-P18b
|
Orthologues |
Aae-Mir-1
Asu-Mir-1
Bfl-Mir-1
Bge-Mir-1
Bla-Mir-1
Cbr-Mir-1
Cel-Mir-1
Cgi-Mir-1
Cin-Mir-1
Cte-Mir-1
Dan-Mir-1
Dma-Mir-1
Dme-Mir-1
Dmo-Mir-1
Dpu-Mir-1
Dsi-Mir-1
Dya-Mir-1
Esc-Mir-1
Hme-Mir-1
Isc-Mir-1
Lan-Mir-1
Lgi-Mir-1
Obi-Mir-1
Ovu-Mir-1
Pfl-Mir-1
Pmi-Mir-1
Sko-Mir-1
Spu-Mir-1
Tca-Mir-1
Xbo-Mir-1
|
Node of Origin (locus) |
C. sculpturatus
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_000671375.1_CSC) |
NW_019385263.1: 290247-290306 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGAAAAGAAGAAAAAAAUCUCGUCACGUCCCCGUACUUCCUUGCUUCCCAUAUGUGAUGUGGUCGGUAUGGAAUGUAAAGAAGUAUGGAGUCGUGGGGAGGAUGAGAAGACGUAGCCUGU
Get precursor sequence
|
Structure | 10 20 30 40 50
AGAAAAGAAGAAAAAAA--| G UCC C UUC UGUGAU
UCUC UCACG CCGUACUUC UUGC CCAUA G
GGAG GGUGC GGUAUGAAG AAUG GGUAU U
UGUCCGAUGCAGAAGAGUA^ G UGA A UAA GGCUGG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UGUG in loop |
Tissue expression
|
|
Star sequence |
Csc-Mir-1-P19_5p* |
mirBase accession | None |
Sequence |
0- CCGUACUUCCUUGCUUCCCAUA -22
Get sequence
|
Mature sequence |
Csc-Mir-1-P19_3p |
mirBase accession | None |
Sequence |
38- UGGAAUGUAAAGAAGUAUGGAG -60
Get sequence
|