MirGeneDB ID | Csc-Mir-10-P2r1 |
Family name |
MIR-10 (all species) |
Seed |
ACCCGUA |
Species |
Arizona bark scorpion (Centruroides sculpturatus) |
MiRBase ID |
|
Paralogues |
Csc-Mir-10-P1q1
Csc-Mir-10-P1q2
Csc-Mir-10-P1q3
Csc-Mir-10-P1r
Csc-Mir-10-P2r2
Csc-Mir-10-P3r1
Csc-Mir-10-P3r2
Csc-Mir-10-P4q
Csc-Mir-10-P4r
|
Orthologues |
Aae-Mir-10-P2
Bfl-Mir-10-P2-v1
Bfl-Mir-10-P2-v2
Bge-Mir-10-P2
Bla-Mir-10-P2-v1
Bla-Mir-10-P2-v2
Bpl-Mir-10-P2
Cbr-Mir-10-P2
Cel-Mir-10-P2
Cgi-Mir-10-P2
Cin-Mir-10-P2
Cte-Mir-10-P2
Dan-Mir-10-P2
Dma-Mir-10-P2
Dme-Mir-10-P2
Dmo-Mir-10-P2
Dpu-Mir-10-P2
Dsi-Mir-10-P2
Dya-Mir-10-P2
Isc-Mir-10-P2
Lan-Mir-10-P2
Lgi-Mir-10-P2
Npo-Mir-10-P2
Nve-Mir-10
Obi-Mir-10-P2
Ovu-Mir-10-P2
Pfl-Mir-10-P2
Pmi-Mir-10-P2
Sko-Mir-10-P2
Tca-Mir-10-P2
Xbo-Mir-10-P2
Xbo-Mir-10-P2-as
|
Node of Origin (locus) |
C. sculpturatus
|
Node of Origin (family) |
Eumetazoa
|
Genome context (GCF_000671375.1_CSC) |
NW_019384344.1: 388111-388173 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGCCUCUGACAUCAGUUGCCAUCACGCCUUAACCCGUAGAUCCGAACUUGUGUUGUUAAAUAGUCUAACCACAAGGUCGAUUCUAUGGGUCCAGGUUGGAUGGAUAAUUACGAACGAAUCUUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGCCUCUGACAUCAGUUG--| AC UA UC A UUGUUAAA
CCAUC GCCU ACCCGUAGA CGA CUUGUG \
GGUAG UGGA UGGGUAUCU GCU GAACAC U
CUUCUAAGCAAGCAUUAAUA^ GU CC UA G CAAUCUGA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Mature sequence |
Csc-Mir-10-P2r1_5p |
mirBase accession | None |
Sequence |
0- AACCCGUAGAUCCGAACUUGUG -22
Get sequence
|
Star sequence |
Csc-Mir-10-P2r1_3p* |
mirBase accession | None |
Sequence |
41- CAAGGUCGAUUCUAUGGGUCCA -63
Get sequence
|