MirGeneDB ID | Csc-Mir-2-P3o |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Arizona bark scorpion (Centruroides sculpturatus) |
MiRBase ID |
|
Paralogues |
Csc-Mir-2-P1n
Csc-Mir-2-P1o
Csc-Mir-2-P2o
Csc-Mir-2-P3n
Csc-Mir-2-P4n
Csc-Mir-2-P4o
|
Orthologues |
Aae-Mir-2-P3
Bge-Mir-2-P3
Cbr-Mir-2-o3
Cel-Mir-2-o3
Dma-Mir-2-P3
Dpu-Mir-2-P3
Hme-Mir-2-P3-v1
Hme-Mir-2-P3-v2
Isc-Mir-2-P3
Tca-Mir-2-P3-v1
Tca-Mir-2-P3-v2
|
Node of Origin (locus) |
C. sculpturatus
|
Node of Origin (family) |
Protostomia
|
Genome context (GCF_000671375.1_CSC) |
NW_019384652.1: 446579-446637 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUAACAAAGAAAAUAUUGUAUGCAACAUUACUCACAAAGUGGCUGUUAUAUGUAAAUUUAAAUCAUAUCACAGCCAGCUUUGAUGAGCAAUGAAGUAUAUAUUUUCAACUUCAAGCACU
Get precursor sequence
|
Structure | 10 20 30 40 50
AUAACAAAGAAAAUAUU-- AA A - -| U UAAAU
GUAUGC CAUU CUCA CAAAG UGGCUGU AUAUG \
UAUAUG GUAA GAGU GUUUC ACCGACA UAUAC U
UCACGAACUUCAACUUUUA AA C A G^ C UAAAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Csc-Mir-2-P3o_5p* |
mirBase accession | None |
Sequence |
0- CUCACAAAGUGGCUGUUAUAUG -22
Get sequence
|
Mature sequence |
Csc-Mir-2-P3o_3p |
mirBase accession | None |
Sequence |
35- UAUCACAGCCAGCUUUGAUGAGCA -59
Get sequence
|