MirGeneDB ID | Dmo-Mir-29-P2h |
Family name |
MIR-29 (all species) |
Seed |
AGCACCA |
Species |
Fruit fly (Drosophila mojavensis) |
MiRBase ID |
|
Paralogues |
Dmo-Mir-29-P1
Dmo-Mir-29-P2g
|
Orthologues |
Aae-Mir-29-P2h
Asu-Mir-29-P2
Bfl-Mir-29-P2
Bge-Mir-29-P2h
Bla-Mir-29-P2
Cbr-Mir-29-P2
Cel-Mir-29-P2
Cgi-Mir-29-P2
Cin-Mir-29-P2
Csc-Mir-29-P2
Cte-Mir-29-P2
Dan-Mir-29-P2h
Dma-Mir-29-P2h
Dme-Mir-29-P2h
Dpu-Mir-29-P2h
Dsi-Mir-29-P2h
Dya-Mir-29-P2h
Esc-Mir-29-P2
Hme-Mir-29-P2h
Isc-Mir-29-P2
Lgi-Mir-29-P2
Npo-Mir-29-P2
Obi-Mir-29-P2
Ovu-Mir-29-P2
Pfl-Mir-29-P2
Pmi-Mir-29-P2
Sko-Mir-29-P2
Spu-Mir-29-P2
Tca-Mir-29-P2h
Xbo-Mir-29-P2
|
Node of Origin (locus) |
Pancrustacea
|
Node of Origin (family) |
Bilateria
|
Genome context (Dmoj_caf1) |
scaffold_6540: 1739281-1739376 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAUGGAUACCAUUAAAAAAUUCAUUUUGGAACUGAAUUCUCGUGGGUCUGCAGUGCACUGUAACCGUUGCAGAGGGCAAUUGUUCAAAUUGAAAUUGAAAUUUUGUAGCACCAUGAGAUUCAGCUCUGGCGUGAGUUUCAAACAUGCAUUCACCAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70
AAUGGAUACCAUUAAAA--| U UG A U GU GUGCACUGUAACCGUUGCAGAGGGC
AAUUCAU U GA CUGAAU CUCGUGG CUGCA \
UUGAGUG G CU GACUUA GAGUACC GAUGU A
AACCACUUACGUACAAACU^ C GU C - AC UUUAAAGUUAAAGUUAAACUUGUUA
150 140 130 120 110 100 90 80 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Star sequence |
Dmo-Mir-29-P2h_5p* |
mirBase accession | None |
Sequence |
0- ACUGAAUUCUCGUGGGUCUGCA -22
Get sequence
|
Mature sequence |
Dmo-Mir-29-P2h_3p |
mirBase accession | None |
Sequence |
75- UAGCACCAUGAGAUUCAGCUC -96
Get sequence
|