MirGeneDB 2.1

MirGeneDB ID

Dmo-Mir-2-P7

Family name MIR-2 (all species)
Seed AUCACAG
Species Fruit fly (Drosophila mojavensis)
MiRBase ID dmo-mir-11
Paralogues Dmo-Mir-2-P1  Dmo-Mir-2-P2a  Dmo-Mir-2-P2b1  Dmo-Mir-2-P2b2  Dmo-Mir-2-P3b  Dmo-Mir-2-P4a-v1  Dmo-Mir-2-P4a-v2  Dmo-Mir-2-P4b-v1  Dmo-Mir-2-P4b-v2  Dmo-Mir-2-P5  Dmo-Mir-2-P6a  Dmo-Mir-2-P6b  Dmo-Mir-2-P6c  Dmo-Mir-2-P8  Dmo-Mir-2-P9 
Orthologues Aae-Mir-2-P7  Asu-Mir-2-o7a  Asu-Mir-2-o7b  Bge-Mir-2-P7  Dan-Mir-2-P7  Dme-Mir-2-P7  Dsi-Mir-2-P7  Dya-Mir-2-P7  Hme-Mir-2-P7  Tca-Mir-2-P7 
Node of Origin (locus) Neoptera
Node of Origin (family) Protostomia
Genome context
(Dmoj_caf1)
scaffold_6540: 1740130-1740196 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CAGUUCGCAUUCGAUUUGAAGCGCACUUAACAAGAACUUUUUCUGUGACCUGCGUGAAUUCCUAUAUGCAAACCGCAUCACAGUCUGAGUUCUUGCUUAGCGCGCACUUCGCACAGCAACAUAAAAA
Get precursor sequence
Structure
        10        20          30        40        50        60    
CAGUUCGCAUUCGAUUUGAA--|   A  UAA         UUU      CC    UGAAUUCCU 
                      GCGC CU   CAAGAACUU   CUGUGA  UGCG         \
                      CGCG GA   GUUCUUGAG   GACACU  ACGC         A
AAAAAUACAACGACACGCUUCA^   C  UUC         UCU      --    CAAACGUAU 
     120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Em Fe Ma Ma
Star sequence

Dmo-Mir-2-P7_5p*

mirBase accessionNone
Sequence
0- CAAGAACUUUUUCUGUGACCUGCG -24
Get sequence
Mature sequence

Dmo-Mir-2-P7_3p

mirBase accessionMIMAT0008679
Sequence
45- CAUCACAGUCUGAGUUCUUGCU -67
Get sequence