MirGeneDB 2.1

MirGeneDB ID

Dno-Mir-15-P2a

Family name MIR-15 (all species)
Seed AGCAGCA
Species Nine-banded armadillo (Dasypus novemcinctus)
MiRBase ID dno-mir-16a
Paralogues Dno-Mir-15-P1a  Dno-Mir-15-P1b  Dno-Mir-15-P1c  Dno-Mir-15-P1d  Dno-Mir-15-P2b  Dno-Mir-15-P2c  Dno-Mir-15-P2d 
Orthologues Ami-Mir-15-P2a  Bta-Mir-15-P2a  Cfa-Mir-15-P2a  Cin-Mir-15-P2  Cli-Mir-15-P2a  Cmi-Mir-15-P2a  Cpi-Mir-15-P2a  Cpo-Mir-15-P2a  Dre-Mir-15-P2a1  Dre-Mir-15-P2a2  Ete-Mir-15-P2a  Gga-Mir-15-P2a  Gja-Mir-15-P2a  Gmo-Mir-15-P2a2  Hsa-Mir-15-P2a  Lch-Mir-15-P2a  Loc-Mir-15-P2a  Mal-Mir-15-P2a2  Mdo-Mir-15-P2a  Mml-Mir-15-P2a  Mmu-Mir-15-P2a  Mun-Mir-15-P2a  Oan-Mir-15-P2a  Ocu-Mir-15-P2a  Pbv-Mir-15-P2a  Rno-Mir-15-P2a  Sha-Mir-15-P2a  Spt-Mir-15-P2a  Sto-Mir-15-P2a  Tgu-Mir-15-P2a  Tni-Mir-15-P2a2  Xla-Mir-15-P2a3  Xla-Mir-15-P2a4  Xtr-Mir-15-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(dasNov3)
JH570793: 729350-729414 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2a)
Mir-3613 JH570793: 688270-688328 [-] UCSC Ensembl
Mir-15-P2a JH570793: 729350-729414 [-] UCSC Ensembl
Mir-15-P1a JH570793: 729493-729551 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUAGUGCUGAUAUUGGUGUCAACAGUGCCUUAGCAGCACGUAAAUAUUGGUGUUAAGAUUCUAAAAUUAUCUCCAGUAUUAACUGUGCUGCUGAAGUAAGGUUGACUACACUCUACAGUAAUAUU
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Structure
        10          20        30         40        50        60 
AUAGUGCUGAUAUUGGU--      AG   C          -| A        UGUUAAGAUU 
                   GUCAAC  UGC UUAGCAGCAC GU AAUAUUGG          C
                   CAGUUG  AUG AGUCGUCGUG CA UUAUGACC          U
UUAUAAUGACAUCUCACAU      GA   A          U^ A        UCUAUUAAAA 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Dno-Mir-15-P2a_5p

mirBase accessionMIMAT0047505
Sequence
0- UAGCAGCACGUAAAUAUUGGUG -22
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Star sequence

Dno-Mir-15-P2a_3p*

mirBase accessionMIMAT0047506
Sequence
42- CCAGUAUUAACUGUGCUGCUGAA -65
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