Mir-154-P12

MirGeneDB ID

Dno-Mir-154-P12

Family name

MIR-154 (all species)

Seed

AUAUAAC

Species

Nine-banded armadillo (Dasypus novemcinctus)

MiRBase ID

dno-mir-410

Paralogues

Dno-Mir-154-P1 Dno-Mir-154-P2-v1 Dno-Mir-154-P2-v2 Dno-Mir-154-P3a-v1 Dno-Mir-154-P3a-v2 Dno-Mir-154-P3b Dno-Mir-154-P4a Dno-Mir-154-P4b Dno-Mir-154-P5 Dno-Mir-154-P6 Dno-Mir-154-P7 Dno-Mir-154-P8 Dno-Mir-154-P9 Dno-Mir-154-P10 Dno-Mir-154-P13 Dno-Mir-154-P14 Dno-Mir-154-P15 Dno-Mir-154-P16 Dno-Mir-154-P17 Dno-Mir-154-P18 Dno-Mir-154-P19 Dno-Mir-154-P20-v1 Dno-Mir-154-P20-v2 Dno-Mir-154-P21 Dno-Mir-154-P22 Dno-Mir-154-P23 Dno-Mir-154-P25 Dno-Mir-154-P26 Dno-Mir-154-P27 Dno-Mir-154-P28c Dno-Mir-154-P28d Dno-Mir-154-P29 Dno-Mir-154-P30 Dno-Mir-154-P31 Dno-Mir-154-P32 Dno-Mir-154-P35 Dno-Mir-154-P36

Orthologues

Bta-Mir-154-P12 Cfa-Mir-154-P12 Cpo-Mir-154-P12 Ete-Mir-154-P12 Hsa-Mir-154-P12 Mml-Mir-154-P12 Mmu-Mir-154-P12 Ocu-Mir-154-P12 Rno-Mir-154-P12

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(dasNov3)

JH578221: 165975-166030 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P12)

Mir-154-P7 JH578221: 124581-124639 [+] UCSC Ensembl
Mir-154-P13 JH578221: 125809-125864 [+] UCSC Ensembl
Mir-154-P2-v1 JH578221: 126266-126320 [+] UCSC Ensembl
Mir-154-P2-v2 JH578221: 126267-126319 [+] UCSC Ensembl
Mir-154-P8 JH578221: 127474-127530 [+] UCSC Ensembl
Mir-154-P30 JH578221: 128018-128073 [+] UCSC Ensembl
Mir-154-P3a-v1 JH578221: 128180-128235 [+] UCSC Ensembl
Mir-154-P3a-v2 JH578221: 128180-128235 [+] UCSC Ensembl
Mir-154-P26 JH578221: 128465-128522 [+] UCSC Ensembl
Mir-154-P4b JH578221: 129181-129240 [+] UCSC Ensembl
Mir-154-P4a JH578221: 129500-129559 [+] UCSC Ensembl
Mir-154-P18 JH578221: 131208-131263 [+] UCSC Ensembl
Mir-154-P29 JH578221: 131614-131668 [+] UCSC Ensembl
Mir-154-P22 JH578221: 133458-133515 [+] UCSC Ensembl
Mir-154-P19 JH578221: 135322-135379 [+] UCSC Ensembl
Mir-154-P23 JH578221: 141458-141514 [+] UCSC Ensembl
Mir-376-P2 JH578221: 141684-141741 [+] UCSC Ensembl
Mir-376-P1 JH578221: 142061-142118 [+] UCSC Ensembl
Mir-154-P9 JH578221: 146722-146784 [+] UCSC Ensembl
Mir-154-P17 JH578221: 147235-147292 [+] UCSC Ensembl
Mir-154-P21 JH578221: 147994-148057 [+] UCSC Ensembl
Mir-154-P27 JH578221: 148479-148537 [+] UCSC Ensembl
Mir-154-P31 JH578221: 152174-152227 [+] UCSC Ensembl
Mir-154-P16 JH578221: 152628-152685 [+] UCSC Ensembl
Mir-154-P10 JH578221: 155333-155390 [+] UCSC Ensembl
Mir-134 JH578221: 155647-155706 [+] UCSC Ensembl
Mir-154-P15 JH578221: 156384-156442 [+] UCSC Ensembl
Mir-154-P3b JH578221: 157215-157271 [+] UCSC Ensembl
Mir-154-P1 JH578221: 160400-160457 [+] UCSC Ensembl
Mir-154-P32 JH578221: 160728-160788 [+] UCSC Ensembl
Mir-154-P20-v2 JH578221: 161286-161341 [+] UCSC Ensembl
Mir-154-P20-v1 JH578221: 161287-161340 [+] UCSC Ensembl
Mir-154-P6 JH578221: 162674-162733 [+] UCSC Ensembl
Mir-541 JH578221: 164635-164700 [+] UCSC Ensembl
Mir-154-P14 JH578221: 165559-165614 [+] UCSC Ensembl
Mir-154-P5 JH578221: 165682-165737 [+] UCSC Ensembl
Mir-154-P12 JH578221: 165975-166030 [+] UCSC Ensembl
Mir-154-P25 JH578221: 166555-166610 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAGCCGGCGUCCCUCUGGGUACUUGAGGAGAGGCUGUCUGUGAUGAGUUCGCUUUAUUAAUGACGAAUAUAACACAGAUGGCCUGUUUUCAGUGCCACCCGCGACGCGGCGGGCGU

Get precursor sequence

Structure

        10           20        30        40        50       
GAGCCGGCGUCCCUCUG---|     U     G            A  A     CUUUA 
                    GGUACU GAGGA AGGCUGUCUGUG UG GUUCG     U
                    CCGUGA CUUUU UCCGGUAGACAC AU UAAGC     U
UGCGGGCGGCGCAGCGCCCA^     -     G            A  A     AGUAA 
    110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Dno-Mir-154-P12_5p*

mirBase accession

MIMAT0047872

Sequence

0- AGGCUGUCUGUGAUGAGUUCG -21

Get sequence

Mature sequence

Dno-Mir-154-P12_3p

mirBase accession

MIMAT0047873

Sequence

35- AAUAUAACACAGAUGGCCUGU -56

Get sequence