MirGeneDB 2.1
MirGeneDB ID

Dno-Mir-154-P28c

Family name MIR-154 (all species)
Seed GAGGAUA
Species Nine-banded armadillo (Dasypus novemcinctus)
MiRBase ID
Paralogues Dno-Mir-154-P1  Dno-Mir-154-P2-v1  Dno-Mir-154-P2-v2  Dno-Mir-154-P3a-v1  Dno-Mir-154-P3a-v2  Dno-Mir-154-P3b  Dno-Mir-154-P4a  Dno-Mir-154-P4b  Dno-Mir-154-P5  Dno-Mir-154-P6  Dno-Mir-154-P7  Dno-Mir-154-P8  Dno-Mir-154-P9  Dno-Mir-154-P10  Dno-Mir-154-P12  Dno-Mir-154-P13  Dno-Mir-154-P14  Dno-Mir-154-P15  Dno-Mir-154-P16  Dno-Mir-154-P17  Dno-Mir-154-P18  Dno-Mir-154-P19  Dno-Mir-154-P20-v1  Dno-Mir-154-P20-v2  Dno-Mir-154-P21  Dno-Mir-154-P22  Dno-Mir-154-P23  Dno-Mir-154-P25  Dno-Mir-154-P26  Dno-Mir-154-P27  Dno-Mir-154-P28d  Dno-Mir-154-P29  Dno-Mir-154-P30  Dno-Mir-154-P31  Dno-Mir-154-P32  Dno-Mir-154-P35  Dno-Mir-154-P36 
Orthologues Bta-Mir-154-P28  Cfa-Mir-154-P28  Cpo-Mir-154-P28  Ete-Mir-154-P28 
Node of Origin (locus) D. novemcinctus
Node of Origin (family) Eutheria
Genome context
(dasNov3)		 JH578221: 143797-143856 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-154-P28c)		 Mir-154-P7 JH578221: 124581-124639 [+] UCSC Ensembl
Mir-154-P13 JH578221: 125809-125864 [+] UCSC Ensembl
Mir-154-P2-v1 JH578221: 126266-126320 [+] UCSC Ensembl
Mir-154-P2-v2 JH578221: 126267-126319 [+] UCSC Ensembl
Mir-154-P8 JH578221: 127474-127530 [+] UCSC Ensembl
Mir-154-P30 JH578221: 128018-128073 [+] UCSC Ensembl
Mir-154-P3a-v1 JH578221: 128180-128235 [+] UCSC Ensembl
Mir-154-P3a-v2 JH578221: 128180-128235 [+] UCSC Ensembl
Mir-154-P26 JH578221: 128465-128522 [+] UCSC Ensembl
Mir-154-P4b JH578221: 129181-129240 [+] UCSC Ensembl
Mir-154-P4a JH578221: 129500-129559 [+] UCSC Ensembl
Mir-154-P18 JH578221: 131208-131263 [+] UCSC Ensembl
Mir-154-P29 JH578221: 131614-131668 [+] UCSC Ensembl
Mir-154-P22 JH578221: 133458-133515 [+] UCSC Ensembl
Mir-154-P19 JH578221: 135322-135379 [+] UCSC Ensembl
Mir-154-P23 JH578221: 141458-141514 [+] UCSC Ensembl
Mir-376-P2 JH578221: 141684-141741 [+] UCSC Ensembl
Mir-376-P1 JH578221: 142061-142118 [+] UCSC Ensembl
Mir-154-P9 JH578221: 146722-146784 [+] UCSC Ensembl
Mir-154-P17 JH578221: 147235-147292 [+] UCSC Ensembl
Mir-154-P21 JH578221: 147994-148057 [+] UCSC Ensembl
Mir-154-P27 JH578221: 148479-148537 [+] UCSC Ensembl
Mir-154-P31 JH578221: 152174-152227 [+] UCSC Ensembl
Mir-154-P16 JH578221: 152628-152685 [+] UCSC Ensembl
Mir-154-P10 JH578221: 155333-155390 [+] UCSC Ensembl
Mir-134 JH578221: 155647-155706 [+] UCSC Ensembl
Mir-154-P15 JH578221: 156384-156442 [+] UCSC Ensembl
Mir-154-P3b JH578221: 157215-157271 [+] UCSC Ensembl
Mir-154-P1 JH578221: 160400-160457 [+] UCSC Ensembl
Mir-154-P32 JH578221: 160728-160788 [+] UCSC Ensembl
Mir-154-P20-v2 JH578221: 161286-161341 [+] UCSC Ensembl
Mir-154-P20-v1 JH578221: 161287-161340 [+] UCSC Ensembl
Mir-154-P6 JH578221: 162674-162733 [+] UCSC Ensembl
Mir-541 JH578221: 164635-164700 [+] UCSC Ensembl
Mir-154-P14 JH578221: 165559-165614 [+] UCSC Ensembl
Mir-154-P5 JH578221: 165682-165737 [+] UCSC Ensembl
Mir-154-P12 JH578221: 165975-166030 [+] UCSC Ensembl
Mir-154-P25 JH578221: 166555-166610 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCACCUGUGCCCUCUUUGGUACUUGAAGAGAGGAUACCCCUUGUGUGUUCAUGCUUUUAAUGGUGAAUAUACGGGGGGAGACUCUUAUUUGCGUACCAAACUCCCUGGGAAGGCGCCG
Get precursor sequence
Structure
        10          20         30        40        50         
CCCCACCUGUGCCCUCU--       U    -|    GAUA              AUGCUU 
                   UUGGUAC UGAA GAGAG    CCCCUUGUGUGUUC      U
                   AACCAUG GUUU UUCUC    GGGGGGCAUAUAAG      U
GCCGCGGAAGGGUCCCUCA       C    A^    AGA-              UGGUAA 
.       110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
To
Mature sequence

Dno-Mir-154-P28c_5p
mirBase accessionNone
Sequence 
0- AGAGGAUACCCCUUGUGUGUUC -22
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Co-mature sequence

Dno-Mir-154-P28c_3p
mirBase accessionNone
Sequence 
38- AUAUACGGGGGGAGACUCUUAU -60
Get sequence