MirGeneDB 2.1

MirGeneDB ID

Dno-Mir-154-P4a

Family name MIR-154 (all species)
Seed ACACACC
Species Nine-banded armadillo (Dasypus novemcinctus)
MiRBase ID dno-mir-329
Paralogues Dno-Mir-154-P1  Dno-Mir-154-P2-v1  Dno-Mir-154-P2-v2  Dno-Mir-154-P3a-v1  Dno-Mir-154-P3a-v2  Dno-Mir-154-P3b  Dno-Mir-154-P4b  Dno-Mir-154-P5  Dno-Mir-154-P6  Dno-Mir-154-P7  Dno-Mir-154-P8  Dno-Mir-154-P9  Dno-Mir-154-P10  Dno-Mir-154-P12  Dno-Mir-154-P13  Dno-Mir-154-P14  Dno-Mir-154-P15  Dno-Mir-154-P16  Dno-Mir-154-P17  Dno-Mir-154-P18  Dno-Mir-154-P19  Dno-Mir-154-P20-v1  Dno-Mir-154-P20-v2  Dno-Mir-154-P21  Dno-Mir-154-P22  Dno-Mir-154-P23  Dno-Mir-154-P25  Dno-Mir-154-P26  Dno-Mir-154-P27  Dno-Mir-154-P28c  Dno-Mir-154-P28d  Dno-Mir-154-P29  Dno-Mir-154-P30  Dno-Mir-154-P31  Dno-Mir-154-P32  Dno-Mir-154-P35  Dno-Mir-154-P36 
Orthologues Bta-Mir-154-P4a  Cfa-Mir-154-P4a  Cpo-Mir-154-P4-o1  Ete-Mir-154-P4a  Hsa-Mir-154-P4a  Mml-Mir-154-P4a  Mmu-Mir-154-P4-o1  Ocu-Mir-154-P4-o1  Rno-Mir-154-P4-o1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(dasNov3)
JH578221: 129500-129559 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-154-P4a)
Mir-154-P7 JH578221: 124581-124639 [+] UCSC Ensembl
Mir-154-P13 JH578221: 125809-125864 [+] UCSC Ensembl
Mir-154-P2-v1 JH578221: 126266-126320 [+] UCSC Ensembl
Mir-154-P2-v2 JH578221: 126267-126319 [+] UCSC Ensembl
Mir-154-P8 JH578221: 127474-127530 [+] UCSC Ensembl
Mir-154-P30 JH578221: 128018-128073 [+] UCSC Ensembl
Mir-154-P3a-v1 JH578221: 128180-128235 [+] UCSC Ensembl
Mir-154-P3a-v2 JH578221: 128180-128235 [+] UCSC Ensembl
Mir-154-P26 JH578221: 128465-128522 [+] UCSC Ensembl
Mir-154-P4b JH578221: 129181-129240 [+] UCSC Ensembl
Mir-154-P4a JH578221: 129500-129559 [+] UCSC Ensembl
Mir-154-P18 JH578221: 131208-131263 [+] UCSC Ensembl
Mir-154-P29 JH578221: 131614-131668 [+] UCSC Ensembl
Mir-154-P22 JH578221: 133458-133515 [+] UCSC Ensembl
Mir-154-P19 JH578221: 135322-135379 [+] UCSC Ensembl
Mir-154-P23 JH578221: 141458-141514 [+] UCSC Ensembl
Mir-376-P2 JH578221: 141684-141741 [+] UCSC Ensembl
Mir-376-P1 JH578221: 142061-142118 [+] UCSC Ensembl
Mir-154-P9 JH578221: 146722-146784 [+] UCSC Ensembl
Mir-154-P17 JH578221: 147235-147292 [+] UCSC Ensembl
Mir-154-P21 JH578221: 147994-148057 [+] UCSC Ensembl
Mir-154-P27 JH578221: 148479-148537 [+] UCSC Ensembl
Mir-154-P31 JH578221: 152174-152227 [+] UCSC Ensembl
Mir-154-P16 JH578221: 152628-152685 [+] UCSC Ensembl
Mir-154-P10 JH578221: 155333-155390 [+] UCSC Ensembl
Mir-134 JH578221: 155647-155706 [+] UCSC Ensembl
Mir-154-P15 JH578221: 156384-156442 [+] UCSC Ensembl
Mir-154-P3b JH578221: 157215-157271 [+] UCSC Ensembl
Mir-154-P1 JH578221: 160400-160457 [+] UCSC Ensembl
Mir-154-P32 JH578221: 160728-160788 [+] UCSC Ensembl
Mir-154-P20-v2 JH578221: 161286-161341 [+] UCSC Ensembl
Mir-154-P20-v1 JH578221: 161287-161340 [+] UCSC Ensembl
Mir-154-P6 JH578221: 162674-162733 [+] UCSC Ensembl
Mir-541 JH578221: 164635-164700 [+] UCSC Ensembl
Mir-154-P14 JH578221: 165559-165614 [+] UCSC Ensembl
Mir-154-P5 JH578221: 165682-165737 [+] UCSC Ensembl
Mir-154-P12 JH578221: 165975-166030 [+] UCSC Ensembl
Mir-154-P25 JH578221: 166555-166610 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUGUCAGUCUCACGCUGUGGUACCUGAAGAGAGGUUUUCUGGGUUUCUGUUUCUUUAUUGAUGAUGAAACACACCUGGUUAACCUCUUUUCCGGUAUCAAAUCCCACCUUCUGGUCCAG
Get precursor sequence
Structure
        10          20        30        40        50        60
CUUGUCAGUCUCACGCUG--|      U           UU UG   UUC      UUUAU 
                    UGGUACC GAAGAGAGGUU  C  GGU   UGUUUC     U
                    ACUAUGG CUUUUCUCCAA  G  CCA   ACAAAG     G
GACCUGGUCUUCCACCCUAA^      C           UU GU   C--      UAGUA 
.       110       100        90        80          70
Deep sequencing
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CommentThe highest set of reads is 1 nt shorter than human and the other mammals at both ends. It is possible that one paralogue has this set of reads and the other the standard set of reads.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Dno-Mir-154-P4a_5p*

mirBase accessionMIMAT0047809
Sequence
0- AGAGGUUUUCUGGGUUUCUGUUUC -24
Get sequence
Mature sequence

Dno-Mir-154-P4a_3p

mirBase accessionMIMAT0047810
Sequence
38- AACACACCUGGUUAACCUCUUU -60
Get sequence